miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 5' -53 NC_005261.1 + 137956 0.66 0.961856
Target:  5'- cGgcgGCUGCGgcggcGGCUgCggcggcgGCUGCgGCGGCg -3'
miRNA:   3'- aCa--UGAUGU-----UCGAgGa------CGACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 7882 0.66 0.961856
Target:  5'- --gGCaGCGAGCggcUCUGUuccgGCGCGGCg -3'
miRNA:   3'- acaUGaUGUUCGa--GGACGa---CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 56813 0.66 0.961856
Target:  5'- --gGCcACGGuGUUCCUGgUGCcGCGGCg -3'
miRNA:   3'- acaUGaUGUU-CGAGGACgACG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 118187 0.66 0.961856
Target:  5'- cUGgGCcGCGGGCcccgcgCCUGCcGCGCuGCg -3'
miRNA:   3'- -ACaUGaUGUUCGa-----GGACGaCGCGuCG- -5'
23599 5' -53 NC_005261.1 + 134418 0.66 0.961856
Target:  5'- cGUgaACUGCu-GCUCCacgcUGCUcGCGgGGCu -3'
miRNA:   3'- aCA--UGAUGuuCGAGG----ACGA-CGCgUCG- -5'
23599 5' -53 NC_005261.1 + 83134 0.66 0.958119
Target:  5'- --cGCgcgGCAcGC-CCUGCagGUGCGGCa -3'
miRNA:   3'- acaUGa--UGUuCGaGGACGa-CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 39074 0.66 0.958119
Target:  5'- aGUACUACAcccGCUCCU-CgGacgGCGGCa -3'
miRNA:   3'- aCAUGAUGUu--CGAGGAcGaCg--CGUCG- -5'
23599 5' -53 NC_005261.1 + 51902 0.66 0.94543
Target:  5'- --cGCUACAucGC-CCggGC-GCGCAGCg -3'
miRNA:   3'- acaUGAUGUu-CGaGGa-CGaCGCGUCG- -5'
23599 5' -53 NC_005261.1 + 15667 0.66 0.94991
Target:  5'- gGUGCUcCAGGaagaucagCCUGCccCGCAGCg -3'
miRNA:   3'- aCAUGAuGUUCga------GGACGacGCGUCG- -5'
23599 5' -53 NC_005261.1 + 69778 0.66 0.94991
Target:  5'- cGgggACUGagccGCUCCcGCggcGCGCGGCg -3'
miRNA:   3'- aCa--UGAUguu-CGAGGaCGa--CGCGUCG- -5'
23599 5' -53 NC_005261.1 + 136732 0.66 0.94991
Target:  5'- --cACUGCAAG-UCCcGCUGCuGCAaGCc -3'
miRNA:   3'- acaUGAUGUUCgAGGaCGACG-CGU-CG- -5'
23599 5' -53 NC_005261.1 + 64920 0.66 0.94991
Target:  5'- --aGCgcgGCGuGCUCCUGCUcgccgcccagggGCGCGuGCg -3'
miRNA:   3'- acaUGa--UGUuCGAGGACGA------------CGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 109847 0.66 0.94991
Target:  5'- cGUGCcgUugGuggcGGCUCCUGg-GgGCAGCg -3'
miRNA:   3'- aCAUG--AugU----UCGAGGACgaCgCGUCG- -5'
23599 5' -53 NC_005261.1 + 119262 0.66 0.94991
Target:  5'- --cGCaUGCGcGCUCCUGCU-CGCugGGCg -3'
miRNA:   3'- acaUG-AUGUuCGAGGACGAcGCG--UCG- -5'
23599 5' -53 NC_005261.1 + 103289 0.66 0.953727
Target:  5'- gGUGCcGCGcgcagccccgcgaAGC-CCUGCaGCgGCAGCa -3'
miRNA:   3'- aCAUGaUGU-------------UCGaGGACGaCG-CGUCG- -5'
23599 5' -53 NC_005261.1 + 48388 0.66 0.954139
Target:  5'- cUGUACUugGGGCUCgCgaaGC-GCGCcuuguGGCu -3'
miRNA:   3'- -ACAUGAugUUCGAG-Ga--CGaCGCG-----UCG- -5'
23599 5' -53 NC_005261.1 + 55151 0.66 0.954139
Target:  5'- aUGUGCgcgcGCGAGCgccgCCgccggcgGCUcGCGgGGCg -3'
miRNA:   3'- -ACAUGa---UGUUCGa---GGa------CGA-CGCgUCG- -5'
23599 5' -53 NC_005261.1 + 107628 0.66 0.954139
Target:  5'- cGUGCgcgggaacuCGAGCgCCcgcGCUGCGCGcGCa -3'
miRNA:   3'- aCAUGau-------GUUCGaGGa--CGACGCGU-CG- -5'
23599 5' -53 NC_005261.1 + 134561 0.66 0.954139
Target:  5'- -uUGCUGgGcGGCgCCgcgGCUGCGCAGg -3'
miRNA:   3'- acAUGAUgU-UCGaGGa--CGACGCGUCg -5'
23599 5' -53 NC_005261.1 + 57256 0.66 0.954139
Target:  5'- cGUGCcgccgcACAcGCUCC-GCaucGCGCGGCa -3'
miRNA:   3'- aCAUGa-----UGUuCGAGGaCGa--CGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.