Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23599 | 5' | -53 | NC_005261.1 | + | 55151 | 0.66 | 0.954139 |
Target: 5'- aUGUGCgcgcGCGAGCgccgCCgccggcgGCUcGCGgGGCg -3' miRNA: 3'- -ACAUGa---UGUUCGa---GGa------CGA-CGCgUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 48388 | 0.66 | 0.954139 |
Target: 5'- cUGUACUugGGGCUCgCgaaGC-GCGCcuuguGGCu -3' miRNA: 3'- -ACAUGAugUUCGAG-Ga--CGaCGCG-----UCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 73770 | 0.66 | 0.94543 |
Target: 5'- ---uCUACgAGGCgcuggCCUGCgacgugcGCGCGGCg -3' miRNA: 3'- acauGAUG-UUCGa----GGACGa------CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 52976 | 0.66 | 0.94543 |
Target: 5'- gGUGCggcgccgGCAGGCgggggcggcgCCcagGCgucgGCGCAGCu -3' miRNA: 3'- aCAUGa------UGUUCGa---------GGa--CGa---CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 44734 | 0.66 | 0.94543 |
Target: 5'- --cGCUGCAgcugGGCcCCgaGCUGCGC-GCg -3' miRNA: 3'- acaUGAUGU----UCGaGGa-CGACGCGuCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 43693 | 0.66 | 0.94543 |
Target: 5'- --cACgGCGAGgUCCUggccugccacgcGCUGCGCgAGCa -3' miRNA: 3'- acaUGaUGUUCgAGGA------------CGACGCG-UCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 133788 | 0.66 | 0.94262 |
Target: 5'- cGUGCggcGCAucccgcccgGGCUgCUcgacggcgacgaggcGCUGCGCGGCc -3' miRNA: 3'- aCAUGa--UGU---------UCGAgGA---------------CGACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 121523 | 0.66 | 0.940695 |
Target: 5'- cGU-CgaugGCGAGCUCCUcgucGCUGuCGgAGCc -3' miRNA: 3'- aCAuGa---UGUUCGAGGA----CGAC-GCgUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 121460 | 0.66 | 0.940695 |
Target: 5'- cGU-CgaugGCGAGCUCCUcggcguaccgGCUGCcgccacgggGCGGCg -3' miRNA: 3'- aCAuGa---UGUUCGAGGA----------CGACG---------CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 48789 | 0.66 | 0.940695 |
Target: 5'- --gGCgaucGCcGGCUCCgugagGCcgUGCGCGGCg -3' miRNA: 3'- acaUGa---UGuUCGAGGa----CG--ACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 132329 | 0.66 | 0.94543 |
Target: 5'- -----cGCGGGgaCCUGCacggggccaUGCGCAGCu -3' miRNA: 3'- acaugaUGUUCgaGGACG---------ACGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 134341 | 0.66 | 0.94543 |
Target: 5'- cUGUACcGCAAGCcCCcGCgccgccGCGCGGg -3' miRNA: 3'- -ACAUGaUGUUCGaGGaCGa-----CGCGUCg -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 103289 | 0.66 | 0.953727 |
Target: 5'- gGUGCcGCGcgcagccccgcgaAGC-CCUGCaGCgGCAGCa -3' miRNA: 3'- aCAUGaUGU-------------UCGaGGACGaCG-CGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 119262 | 0.66 | 0.94991 |
Target: 5'- --cGCaUGCGcGCUCCUGCU-CGCugGGCg -3' miRNA: 3'- acaUG-AUGUuCGAGGACGAcGCG--UCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 109847 | 0.66 | 0.94991 |
Target: 5'- cGUGCcgUugGuggcGGCUCCUGg-GgGCAGCg -3' miRNA: 3'- aCAUG--AugU----UCGAGGACgaCgCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 64920 | 0.66 | 0.94991 |
Target: 5'- --aGCgcgGCGuGCUCCUGCUcgccgcccagggGCGCGuGCg -3' miRNA: 3'- acaUGa--UGUuCGAGGACGA------------CGCGU-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 136732 | 0.66 | 0.94991 |
Target: 5'- --cACUGCAAG-UCCcGCUGCuGCAaGCc -3' miRNA: 3'- acaUGAUGUUCgAGGaCGACG-CGU-CG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 69778 | 0.66 | 0.94991 |
Target: 5'- cGgggACUGagccGCUCCcGCggcGCGCGGCg -3' miRNA: 3'- aCa--UGAUguu-CGAGGaCGa--CGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 15667 | 0.66 | 0.94991 |
Target: 5'- gGUGCUcCAGGaagaucagCCUGCccCGCAGCg -3' miRNA: 3'- aCAUGAuGUUCga------GGACGacGCGUCG- -5' |
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23599 | 5' | -53 | NC_005261.1 | + | 51902 | 0.66 | 0.94543 |
Target: 5'- --cGCUACAucGC-CCggGC-GCGCAGCg -3' miRNA: 3'- acaUGAUGUu-CGaGGa-CGaCGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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