miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2360 5' -46.6 NC_001416.1 + 45707 0.66 0.986303
Target:  5'- gGAAAGAAGCUGG-UAGCG---UCCGGc -3'
miRNA:   3'- -UUUUUUUCGGUCuGUCGUcaaAGGCC- -5'
2360 5' -46.6 NC_001416.1 + 43627 0.72 0.821657
Target:  5'- -uGGAAAGCCAGuugaucauCAGCAGguaaUCUGGa -3'
miRNA:   3'- uuUUUUUCGGUCu-------GUCGUCaa--AGGCC- -5'
2360 5' -46.6 NC_001416.1 + 42810 0.68 0.950157
Target:  5'- -uGAGGuGCC--GCAGCAGUUgUCCGGu -3'
miRNA:   3'- uuUUUUuCGGucUGUCGUCAA-AGGCC- -5'
2360 5' -46.6 NC_001416.1 + 39479 0.68 0.945131
Target:  5'- cGGAGuuuGGCCGGGCucAGCAcGUUaCCGGa -3'
miRNA:   3'- -UUUUuu-UCGGUCUG--UCGU-CAAaGGCC- -5'
2360 5' -46.6 NC_001416.1 + 30886 1.1 0.005059
Target:  5'- cAAAAAAAGCCAGACAGCAGUUUCCGGa -3'
miRNA:   3'- -UUUUUUUCGGUCUGUCGUCAAAGGCC- -5'
2360 5' -46.6 NC_001416.1 + 18576 0.7 0.885298
Target:  5'- --uGAucGCCAGAUAGUGGUgcUUCCGc -3'
miRNA:   3'- uuuUUuuCGGUCUGUCGUCA--AAGGCc -5'
2360 5' -46.6 NC_001416.1 + 12901 0.67 0.97067
Target:  5'- -cAGAcAGCCGGuC-GCAGgcgUCCGGg -3'
miRNA:   3'- uuUUUuUCGGUCuGuCGUCaa-AGGCC- -5'
2360 5' -46.6 NC_001416.1 + 9817 0.71 0.841192
Target:  5'- ---cGGAGUCAGACAGCAa---CCGGa -3'
miRNA:   3'- uuuuUUUCGGUCUGUCGUcaaaGGCC- -5'
2360 5' -46.6 NC_001416.1 + 9209 0.68 0.950157
Target:  5'- -cGGAGAGCagGGGCAGCAGgcgcugCUGGc -3'
miRNA:   3'- uuUUUUUCGg-UCUGUCGUCaaa---GGCC- -5'
2360 5' -46.6 NC_001416.1 + 8693 0.68 0.96336
Target:  5'- -cGAAGAGCUGGACAGCGauacCUGGc -3'
miRNA:   3'- uuUUUUUCGGUCUGUCGUcaaaGGCC- -5'
2360 5' -46.6 NC_001416.1 + 6806 0.66 0.982048
Target:  5'- ----cGAGCUggAGACAGCGGUgaaagacCUGGg -3'
miRNA:   3'- uuuuuUUCGG--UCUGUCGUCAaa-----GGCC- -5'
2360 5' -46.6 NC_001416.1 + 5867 0.66 0.988117
Target:  5'- ------cGCCGGGC-GCGGUUgcgguaugagCCGGg -3'
miRNA:   3'- uuuuuuuCGGUCUGuCGUCAAa---------GGCC- -5'
2360 5' -46.6 NC_001416.1 + 5420 0.66 0.988117
Target:  5'- cGAGAAcGCCAGcGCGGCGcag-CCGGa -3'
miRNA:   3'- uUUUUUuCGGUC-UGUCGUcaaaGGCC- -5'
2360 5' -46.6 NC_001416.1 + 4536 0.67 0.97067
Target:  5'- -----cAGCCuGACGgauGCGGUgUCCGGc -3'
miRNA:   3'- uuuuuuUCGGuCUGU---CGUCAaAGGCC- -5'
2360 5' -46.6 NC_001416.1 + 3679 0.66 0.987052
Target:  5'- gAGAGuGAGCUGGAUAcGCAGUcagcgauggauuuuaUUCUGGg -3'
miRNA:   3'- -UUUUuUUCGGUCUGU-CGUCA---------------AAGGCC- -5'
2360 5' -46.6 NC_001416.1 + 591 0.66 0.982048
Target:  5'- ------uGUCGGuGCAGCGGcguUUUCCGGa -3'
miRNA:   3'- uuuuuuuCGGUC-UGUCGUC---AAAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.