miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 104341 0.66 0.985703
Target:  5'- aGCGGCcgGCCGUcgCG-CAGCGCCgcccGCg -3'
miRNA:   3'- -UGUUGa-CGGCGaaGUaGUUGCGGa---UG- -5'
23600 3' -51.3 NC_005261.1 + 66230 0.66 0.985703
Target:  5'- aGCAGCcGCUGCUugaugcccgccgUCGUCAccagcACGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGA------------AGUAGU-----UGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 60030 0.66 0.985703
Target:  5'- -gAGCccGCCGC--CGUCGGCGCCgacgGCg -3'
miRNA:   3'- ugUUGa-CGGCGaaGUAGUUGCGGa---UG- -5'
23600 3' -51.3 NC_005261.1 + 131417 0.66 0.985703
Target:  5'- cGCcGCUGCCGg--CAgCGGCGCCgGCg -3'
miRNA:   3'- -UGuUGACGGCgaaGUaGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 116921 0.66 0.985703
Target:  5'- gACAGCcGCCGCgggCugcUgGACGCCUuccGCg -3'
miRNA:   3'- -UGUUGaCGGCGaa-Gu--AgUUGCGGA---UG- -5'
23600 3' -51.3 NC_005261.1 + 68794 0.66 0.985703
Target:  5'- uGCAGgUGCgGC-UCAUCccgcggacccacAACGCCUGg -3'
miRNA:   3'- -UGUUgACGgCGaAGUAG------------UUGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 122686 0.66 0.983837
Target:  5'- uCAGCUGCgccUGCUcCAUCGccGCGCCgccgGCc -3'
miRNA:   3'- uGUUGACG---GCGAaGUAGU--UGCGGa---UG- -5'
23600 3' -51.3 NC_005261.1 + 118070 0.66 0.983837
Target:  5'- gGCAGCgGCCGCagCcgCGcuCGUCUGCu -3'
miRNA:   3'- -UGUUGaCGGCGaaGuaGUu-GCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 31689 0.66 0.983837
Target:  5'- cGCGGCgGCgGCUgaUCGugaUCGACGCCg-- -3'
miRNA:   3'- -UGUUGaCGgCGA--AGU---AGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 50031 0.66 0.983837
Target:  5'- cCAGCcGCCGCgcgaCGgugCAGCGCCgccGCg -3'
miRNA:   3'- uGUUGaCGGCGaa--GUa--GUUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 108741 0.66 0.983837
Target:  5'- aGCGGCggcGCCGCggcgUCcgCGGCGCgCcGCg -3'
miRNA:   3'- -UGUUGa--CGGCGa---AGuaGUUGCG-GaUG- -5'
23600 3' -51.3 NC_005261.1 + 99105 0.66 0.981791
Target:  5'- aGCGGCuUGCuCGCg--AUCAGCGCCg-- -3'
miRNA:   3'- -UGUUG-ACG-GCGaagUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 82338 0.66 0.981791
Target:  5'- cGCGuagcGCUGCCgGCgcaCGUCGGCGUCgGCg -3'
miRNA:   3'- -UGU----UGACGG-CGaa-GUAGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 45064 0.66 0.979558
Target:  5'- -uGGCgggGCCGCccacuuucacgUCGUCGuccgucacGCGCCUGCg -3'
miRNA:   3'- ugUUGa--CGGCGa----------AGUAGU--------UGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 12442 0.66 0.979558
Target:  5'- uGCGGCgucgGCCGC---GUCGGCGCCc-- -3'
miRNA:   3'- -UGUUGa---CGGCGaagUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 31338 0.66 0.979558
Target:  5'- cCAGCgcGCCGCUgcggCGgcgCGugGCCUGg -3'
miRNA:   3'- uGUUGa-CGGCGAa---GUa--GUugCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 49963 0.66 0.979558
Target:  5'- gGCGGC-GCCGUcgUCAUCcccGGCGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGa-AGUAG---UUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 93737 0.66 0.979558
Target:  5'- gGCAGC-GCgCGCUUCGuacUCGGCgGCCcGCg -3'
miRNA:   3'- -UGUUGaCG-GCGAAGU---AGUUG-CGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 76692 0.66 0.977126
Target:  5'- gACGACgccgGCCuguuCUUCGUCGGCGUCg-- -3'
miRNA:   3'- -UGUUGa---CGGc---GAAGUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 106421 0.66 0.977126
Target:  5'- uGCAGCggGCCGCg--GUCcACGCCcGCc -3'
miRNA:   3'- -UGUUGa-CGGCGaagUAGuUGCGGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.