Results 21 - 40 of 97 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 60164 | 0.71 | 0.845799 |
Target: 5'- cGCcGCUGCCGUggaagcgCGUCuGCGCCgcgGCg -3' miRNA: 3'- -UGuUGACGGCGaa-----GUAGuUGCGGa--UG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 99405 | 0.71 | 0.82848 |
Target: 5'- gGCGGCUGCCGCacgagCGUgAACGUC-ACg -3' miRNA: 3'- -UGUUGACGGCGaa---GUAgUUGCGGaUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 135023 | 0.71 | 0.862257 |
Target: 5'- cGCAcGCgGCCGCggCGgcgaggcCGACGCCUGCg -3' miRNA: 3'- -UGU-UGaCGGCGaaGUa------GUUGCGGAUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 59662 | 0.7 | 0.899265 |
Target: 5'- gGCGACUGCgGCcgggUCGUCGAaGCCg-- -3' miRNA: 3'- -UGUUGACGgCGa---AGUAGUUgCGGaug -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 101407 | 0.7 | 0.899265 |
Target: 5'- aGCAGC-GCCGCUUgCGUCAcgACGUCgGCc -3' miRNA: 3'- -UGUUGaCGGCGAA-GUAGU--UGCGGaUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 63964 | 0.7 | 0.899265 |
Target: 5'- cGCAGCUGgUGC---GUCAGCGCCaGCg -3' miRNA: 3'- -UGUUGACgGCGaagUAGUUGCGGaUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 133864 | 0.7 | 0.889527 |
Target: 5'- cGCGACUGCCGCgccuaccuGugGUCUGCg -3' miRNA: 3'- -UGUUGACGGCGaaguag--UugCGGAUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 86721 | 0.7 | 0.89236 |
Target: 5'- cCAGCUucGCCGCcUCGUCcgccGCGcCCUGCa -3' miRNA: 3'- uGUUGA--CGGCGaAGUAGu---UGC-GGAUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 117447 | 0.69 | 0.912925 |
Target: 5'- gGCGGCUGCUGCagaaggugcggcaggUCGgcggCGACGCgCUGCu -3' miRNA: 3'- -UGUUGACGGCGa--------------AGUa---GUUGCG-GAUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 22814 | 0.69 | 0.924285 |
Target: 5'- gGCGgcGCUGCCGCcgccgcCGUUGGCGCCggGCu -3' miRNA: 3'- -UGU--UGACGGCGaa----GUAGUUGCGGa-UG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 106894 | 0.69 | 0.924285 |
Target: 5'- uGCAGC-GCCuGCgUCGUCcGCGCCgcgGCg -3' miRNA: 3'- -UGUUGaCGG-CGaAGUAGuUGCGGa--UG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 100101 | 0.69 | 0.905913 |
Target: 5'- cGCcGCUGCCGCcgccCAgCGGCGCCcGCa -3' miRNA: 3'- -UGuUGACGGCGaa--GUaGUUGCGGaUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 108403 | 0.69 | 0.905913 |
Target: 5'- cCAGCaGCCGCgcCA-CcGCGCCUGCg -3' miRNA: 3'- uGUUGaCGGCGaaGUaGuUGCGGAUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 62610 | 0.69 | 0.9123 |
Target: 5'- gGCAGCgguagGCgGC--CAUCAGCGCCaGCg -3' miRNA: 3'- -UGUUGa----CGgCGaaGUAGUUGCGGaUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 89837 | 0.69 | 0.92988 |
Target: 5'- cGCGGCcgggccggaggGCCGCggcgUCAUCGGCGaguaCUGCa -3' miRNA: 3'- -UGUUGa----------CGGCGa---AGUAGUUGCg---GAUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 91176 | 0.69 | 0.924285 |
Target: 5'- gGCAGCUcccGCCggGCUUCGcgcgcuUCGGCGCCgUGCu -3' miRNA: 3'- -UGUUGA---CGG--CGAAGU------AGUUGCGG-AUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 66116 | 0.69 | 0.935209 |
Target: 5'- cGCAGCgccuUGCC-CaUCGUCAGCGCCg-- -3' miRNA: 3'- -UGUUG----ACGGcGaAGUAGUUGCGGaug -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 52962 | 0.69 | 0.918425 |
Target: 5'- aGCAGC-GCCGCgcCGgugCGGCGCCgGCa -3' miRNA: 3'- -UGUUGaCGGCGaaGUa--GUUGCGGaUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 126794 | 0.69 | 0.935209 |
Target: 5'- uGCGuCUGCCGagagCAgcgCGGCGUCUGCg -3' miRNA: 3'- -UGUuGACGGCgaa-GUa--GUUGCGGAUG- -5' |
|||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 99663 | 0.69 | 0.92988 |
Target: 5'- aGCAcGCUGaCCGU--CGUCAGCGCgCUGCc -3' miRNA: 3'- -UGU-UGAC-GGCGaaGUAGUUGCG-GAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home