miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 100101 0.69 0.905913
Target:  5'- cGCcGCUGCCGCcgccCAgCGGCGCCcGCa -3'
miRNA:   3'- -UGuUGACGGCGaa--GUaGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 117447 0.69 0.912925
Target:  5'- gGCGGCUGCUGCagaaggugcggcaggUCGgcggCGACGCgCUGCu -3'
miRNA:   3'- -UGUUGACGGCGa--------------AGUa---GUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 127682 0.69 0.918425
Target:  5'- gGCGGCgGCCGCUgcccCggCGGCGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGAa---GuaGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 262 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 298 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 137945 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 137981 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 31531 0.68 0.945076
Target:  5'- cCGGCUGCUGCUgagCGccgacUCGcACGCCUGg -3'
miRNA:   3'- uGUUGACGGCGAa--GU-----AGU-UGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 2426 0.68 0.945076
Target:  5'- gGCGGCggGCCGCgaucUCGgcCAGCGCCUc- -3'
miRNA:   3'- -UGUUGa-CGGCGa---AGUa-GUUGCGGAug -5'
23600 3' -51.3 NC_005261.1 + 129207 0.68 0.949618
Target:  5'- cGCAGCUGCUucuGCUggugCGGCGCCUc- -3'
miRNA:   3'- -UGUUGACGG---CGAaguaGUUGCGGAug -5'
23600 3' -51.3 NC_005261.1 + 32313 0.68 0.957935
Target:  5'- cGCcGCcGCCGCggCcgCGGCGCCcgGCg -3'
miRNA:   3'- -UGuUGaCGGCGaaGuaGUUGCGGa-UG- -5'
23600 3' -51.3 NC_005261.1 + 65531 0.68 0.957935
Target:  5'- cCAGCgcgGCCGCgcgggCAgCAGCGCgUGCc -3'
miRNA:   3'- uGUUGa--CGGCGaa---GUaGUUGCGgAUG- -5'
23600 3' -51.3 NC_005261.1 + 4876 0.68 0.957935
Target:  5'- cACGACgGCCGCcUCAgccgCGGcCGCCUcgGCu -3'
miRNA:   3'- -UGUUGaCGGCGaAGUa---GUU-GCGGA--UG- -5'
23600 3' -51.3 NC_005261.1 + 29561 0.68 0.957935
Target:  5'- uGCAGCUGgCGCgccugcugCAgCGGCGCgUGCa -3'
miRNA:   3'- -UGUUGACgGCGaa------GUaGUUGCGgAUG- -5'
23600 3' -51.3 NC_005261.1 + 71939 0.68 0.956352
Target:  5'- -aGGCUGCCGCgcgccccacuggCGUCGGCGCgggGCg -3'
miRNA:   3'- ugUUGACGGCGaa----------GUAGUUGCGga-UG- -5'
23600 3' -51.3 NC_005261.1 + 132826 0.68 0.953903
Target:  5'- cGCGACU-UCGCuUUCGUCGACGCggccguCUACa -3'
miRNA:   3'- -UGUUGAcGGCG-AAGUAGUUGCG------GAUG- -5'
23600 3' -51.3 NC_005261.1 + 130333 0.68 0.953903
Target:  5'- gACGGCccgGCCGCgcUCGggGACGCgCUGCg -3'
miRNA:   3'- -UGUUGa--CGGCGa-AGUagUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 34663 0.68 0.953903
Target:  5'- cGCAGcCUGCUGUUUguggCAGCGCgCUGCg -3'
miRNA:   3'- -UGUU-GACGGCGAAgua-GUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 131816 0.68 0.949618
Target:  5'- gACGGCgcgccGCCGCUUgAcgCGGCGCCcGCc -3'
miRNA:   3'- -UGUUGa----CGGCGAAgUa-GUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 127220 0.67 0.971637
Target:  5'- cGCGGCUuaaGCCGCgcgCGUCGAaaaaGCCUu- -3'
miRNA:   3'- -UGUUGA---CGGCGaa-GUAGUUg---CGGAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.