miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 91055 1.11 0.004859
Target:  5'- aACAACUGCCGCUUCAUCAACGCCUACg -3'
miRNA:   3'- -UGUUGACGGCGAAGUAGUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 45400 0.77 0.548132
Target:  5'- uGCAGCUGUCGUgccugcugCGGCGCCUGCg -3'
miRNA:   3'- -UGUUGACGGCGaagua---GUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 102914 0.76 0.560801
Target:  5'- cGCAGCgccuccGCCGCUUCGcgCAGCGCCg-- -3'
miRNA:   3'- -UGUUGa-----CGGCGAAGUa-GUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 53016 0.76 0.60353
Target:  5'- cGCAGCUcGCCagcGCUUCcgCGGCGCCgggGCa -3'
miRNA:   3'- -UGUUGA-CGG---CGAAGuaGUUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 112971 0.76 0.613214
Target:  5'- cACGGCgGCCGCcaccgccgccaucUUCGUCAACGCCa-- -3'
miRNA:   3'- -UGUUGaCGGCG-------------AAGUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 110392 0.75 0.646629
Target:  5'- uGCGGCUGgaCCGCUUCu---ACGCCUGCc -3'
miRNA:   3'- -UGUUGAC--GGCGAAGuaguUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 59453 0.75 0.646629
Target:  5'- aGCAGCgcgGCCGCggcgUCGgggggCAGCGCCgGCg -3'
miRNA:   3'- -UGUUGa--CGGCGa---AGUa----GUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 103485 0.74 0.68952
Target:  5'- cCAGCUGgCGCaagacgUCGUCGGCGCCgcggACg -3'
miRNA:   3'- uGUUGACgGCGa-----AGUAGUUGCGGa---UG- -5'
23600 3' -51.3 NC_005261.1 + 52374 0.74 0.68952
Target:  5'- cGCGGCgGCgGCcccggUCGUCAGgGCCUGCa -3'
miRNA:   3'- -UGUUGaCGgCGa----AGUAGUUgCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 39359 0.73 0.731561
Target:  5'- gGCGGCaGCCGCcUCAUCGGCgGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGaAGUAGUUG-CGGaug -5'
23600 3' -51.3 NC_005261.1 + 115292 0.73 0.74186
Target:  5'- gGCAGCaGCCGCaacgCGUCGGCGCacguCUGCg -3'
miRNA:   3'- -UGUUGaCGGCGaa--GUAGUUGCG----GAUG- -5'
23600 3' -51.3 NC_005261.1 + 124414 0.73 0.74186
Target:  5'- uGCAGCgccaugGCCuGCUUCAUCGcGCGCCgccACa -3'
miRNA:   3'- -UGUUGa-----CGG-CGAAGUAGU-UGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 133351 0.73 0.762126
Target:  5'- cGCGgcGCUGCCGCgcagggCuUCGGCuGCCUGCg -3'
miRNA:   3'- -UGU--UGACGGCGaa----GuAGUUG-CGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 17953 0.73 0.772072
Target:  5'- -gAACaUGUCGCUUCGUCGAagaGCCUGu -3'
miRNA:   3'- ugUUG-ACGGCGAAGUAGUUg--CGGAUg -5'
23600 3' -51.3 NC_005261.1 + 89395 0.73 0.772072
Target:  5'- uGCGAcCUGCCGCcggccUUCcUCGGCGCgUGCg -3'
miRNA:   3'- -UGUU-GACGGCG-----AAGuAGUUGCGgAUG- -5'
23600 3' -51.3 NC_005261.1 + 101213 0.72 0.801039
Target:  5'- cCAGCUGCCGCcgcagcgCGUCGaggugGCGCCUcaGCu -3'
miRNA:   3'- uGUUGACGGCGaa-----GUAGU-----UGCGGA--UG- -5'
23600 3' -51.3 NC_005261.1 + 83196 0.72 0.818612
Target:  5'- cGCAGCUGCCGCgugaCGUggucgcaggugcaCAGCGCCa-- -3'
miRNA:   3'- -UGUUGACGGCGaa--GUA-------------GUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 99405 0.71 0.82848
Target:  5'- gGCGGCUGCCGCacgagCGUgAACGUC-ACg -3'
miRNA:   3'- -UGUUGACGGCGaa---GUAgUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 104671 0.71 0.845799
Target:  5'- gGCGugUGCUGCgg---CAGCGCCUGg -3'
miRNA:   3'- -UGUugACGGCGaaguaGUUGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 60164 0.71 0.845799
Target:  5'- cGCcGCUGCCGUggaagcgCGUCuGCGCCgcgGCg -3'
miRNA:   3'- -UGuUGACGGCGaa-----GUAGuUGCGGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.