miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 29639 0.71 0.862257
Target:  5'- cGCcGCUGCCGCcggUCGggGACGCCa-- -3'
miRNA:   3'- -UGuUGACGGCGa--AGUagUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 135023 0.71 0.862257
Target:  5'- cGCAcGCgGCCGCggCGgcgaggcCGACGCCUGCg -3'
miRNA:   3'- -UGU-UGaCGGCGaaGUa------GUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 81683 0.71 0.862257
Target:  5'- cACGACUGCCGCccgUCcgggccCGGCGCCg-- -3'
miRNA:   3'- -UGUUGACGGCGa--AGua----GUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 133864 0.7 0.889527
Target:  5'- cGCGACUGCCGCgccuaccuGugGUCUGCg -3'
miRNA:   3'- -UGUUGACGGCGaaguag--UugCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 86721 0.7 0.89236
Target:  5'- cCAGCUucGCCGCcUCGUCcgccGCGcCCUGCa -3'
miRNA:   3'- uGUUGA--CGGCGaAGUAGu---UGC-GGAUG- -5'
23600 3' -51.3 NC_005261.1 + 59662 0.7 0.899265
Target:  5'- gGCGACUGCgGCcgggUCGUCGAaGCCg-- -3'
miRNA:   3'- -UGUUGACGgCGa---AGUAGUUgCGGaug -5'
23600 3' -51.3 NC_005261.1 + 63964 0.7 0.899265
Target:  5'- cGCAGCUGgUGC---GUCAGCGCCaGCg -3'
miRNA:   3'- -UGUUGACgGCGaagUAGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 101407 0.7 0.899265
Target:  5'- aGCAGC-GCCGCUUgCGUCAcgACGUCgGCc -3'
miRNA:   3'- -UGUUGaCGGCGAA-GUAGU--UGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 99473 0.69 0.905913
Target:  5'- gGCGGCgcugGCCGCUgCGgcCAGCGCCgccGCg -3'
miRNA:   3'- -UGUUGa---CGGCGAaGUa-GUUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 100101 0.69 0.905913
Target:  5'- cGCcGCUGCCGCcgccCAgCGGCGCCcGCa -3'
miRNA:   3'- -UGuUGACGGCGaa--GUaGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 108403 0.69 0.905913
Target:  5'- cCAGCaGCCGCgcCA-CcGCGCCUGCg -3'
miRNA:   3'- uGUUGaCGGCGaaGUaGuUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 62610 0.69 0.9123
Target:  5'- gGCAGCgguagGCgGC--CAUCAGCGCCaGCg -3'
miRNA:   3'- -UGUUGa----CGgCGaaGUAGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 135843 0.69 0.9123
Target:  5'- gGCuuGCgugGCgGgCUUCAUCGACGCCUuggACa -3'
miRNA:   3'- -UGu-UGa--CGgC-GAAGUAGUUGCGGA---UG- -5'
23600 3' -51.3 NC_005261.1 + 117447 0.69 0.912925
Target:  5'- gGCGGCUGCUGCagaaggugcggcaggUCGgcggCGACGCgCUGCu -3'
miRNA:   3'- -UGUUGACGGCGa--------------AGUa---GUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 52962 0.69 0.918425
Target:  5'- aGCAGC-GCCGCgcCGgugCGGCGCCgGCa -3'
miRNA:   3'- -UGUUGaCGGCGaaGUa--GUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 127682 0.69 0.918425
Target:  5'- gGCGGCgGCCGCUgcccCggCGGCGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGAa---GuaGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 91176 0.69 0.924285
Target:  5'- gGCAGCUcccGCCggGCUUCGcgcgcuUCGGCGCCgUGCu -3'
miRNA:   3'- -UGUUGA---CGG--CGAAGU------AGUUGCGG-AUG- -5'
23600 3' -51.3 NC_005261.1 + 106894 0.69 0.924285
Target:  5'- uGCAGC-GCCuGCgUCGUCcGCGCCgcgGCg -3'
miRNA:   3'- -UGUUGaCGG-CGaAGUAGuUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 22814 0.69 0.924285
Target:  5'- gGCGgcGCUGCCGCcgccgcCGUUGGCGCCggGCu -3'
miRNA:   3'- -UGU--UGACGGCGaa----GUAGUUGCGGa-UG- -5'
23600 3' -51.3 NC_005261.1 + 99663 0.69 0.92988
Target:  5'- aGCAcGCUGaCCGU--CGUCAGCGCgCUGCc -3'
miRNA:   3'- -UGU-UGAC-GGCGaaGUAGUUGCG-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.