miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 106421 0.66 0.977126
Target:  5'- uGCAGCggGCCGCg--GUCcACGCCcGCc -3'
miRNA:   3'- -UGUUGa-CGGCGaagUAGuUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 76692 0.66 0.977126
Target:  5'- gACGACgccgGCCuguuCUUCGUCGGCGUCg-- -3'
miRNA:   3'- -UGUUGa---CGGc---GAAGUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 110975 0.66 0.977126
Target:  5'- uGCAugUacGCCGcCUUCGU--GCGCCUGg -3'
miRNA:   3'- -UGUugA--CGGC-GAAGUAguUGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 3530 0.67 0.974489
Target:  5'- cGCGGCgGCCGCcUCGgcgcgCAGCGCg-GCg -3'
miRNA:   3'- -UGUUGaCGGCGaAGUa----GUUGCGgaUG- -5'
23600 3' -51.3 NC_005261.1 + 51920 0.67 0.973375
Target:  5'- cGCAGCgGCCGCggccuggucccgcUCGUCGccgGCGCCa-- -3'
miRNA:   3'- -UGUUGaCGGCGa------------AGUAGU---UGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 76603 0.67 0.972804
Target:  5'- cGCGcgcGCUGCCGCccgccgccccgcUgccCAUCAacaucgaccacgcgaGCGCCUGCg -3'
miRNA:   3'- -UGU---UGACGGCG------------Aa--GUAGU---------------UGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 127220 0.67 0.971637
Target:  5'- cGCGGCUuaaGCCGCgcgCGUCGAaaaaGCCUu- -3'
miRNA:   3'- -UGUUGA---CGGCGaa-GUAGUUg---CGGAug -5'
23600 3' -51.3 NC_005261.1 + 48931 0.67 0.971637
Target:  5'- cCAGC-GCCGCUgucUCGaCGGCGCCcGCc -3'
miRNA:   3'- uGUUGaCGGCGA---AGUaGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 83081 0.67 0.971637
Target:  5'- gGCGGCcGgCGCUUC--CAGCGCCUccaGCg -3'
miRNA:   3'- -UGUUGaCgGCGAAGuaGUUGCGGA---UG- -5'
23600 3' -51.3 NC_005261.1 + 102486 0.67 0.971637
Target:  5'- uCGGCgcGCCGCcgCGcCAGCGCCUGg -3'
miRNA:   3'- uGUUGa-CGGCGaaGUaGUUGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 132962 0.67 0.971637
Target:  5'- cCGACgugGCCGcCUUCGUCGccGCGCaCcGCg -3'
miRNA:   3'- uGUUGa--CGGC-GAAGUAGU--UGCG-GaUG- -5'
23600 3' -51.3 NC_005261.1 + 4481 0.67 0.968563
Target:  5'- cGCGGC-GCCGCggCGUa---GCCUGCg -3'
miRNA:   3'- -UGUUGaCGGCGaaGUAguugCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 91427 0.67 0.968563
Target:  5'- cGCGACgccGCCGCg--GUgAACGCgCUGCg -3'
miRNA:   3'- -UGUUGa--CGGCGaagUAgUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 136490 0.67 0.968563
Target:  5'- aGCAGCgaGCaGCUcggCGcCGACGCCUGCu -3'
miRNA:   3'- -UGUUGa-CGgCGAa--GUaGUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 107713 0.67 0.965259
Target:  5'- aACGucGCUGCCGCggCA--GGCGgCUGCg -3'
miRNA:   3'- -UGU--UGACGGCGaaGUagUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 85560 0.67 0.965259
Target:  5'- uGCGGC-GCCGCgagguUCGGCGCCgcgACc -3'
miRNA:   3'- -UGUUGaCGGCGaagu-AGUUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 66285 0.67 0.965259
Target:  5'- cGCGGCUGUCGCagugCGUCAgGCGCg-GCa -3'
miRNA:   3'- -UGUUGACGGCGaa--GUAGU-UGCGgaUG- -5'
23600 3' -51.3 NC_005261.1 + 126500 0.67 0.961718
Target:  5'- cCAGCUGCCGCaggcggUCugccUgGGCGCCcGCg -3'
miRNA:   3'- uGUUGACGGCGa-----AGu---AgUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 65531 0.68 0.957935
Target:  5'- cCAGCgcgGCCGCgcgggCAgCAGCGCgUGCc -3'
miRNA:   3'- uGUUGa--CGGCGaa---GUaGUUGCGgAUG- -5'
23600 3' -51.3 NC_005261.1 + 4876 0.68 0.957935
Target:  5'- cACGACgGCCGCcUCAgccgCGGcCGCCUcgGCu -3'
miRNA:   3'- -UGUUGaCGGCGaAGUa---GUU-GCGGA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.