miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 4876 0.68 0.957935
Target:  5'- cACGACgGCCGCcUCAgccgCGGcCGCCUcgGCu -3'
miRNA:   3'- -UGUUGaCGGCGaAGUa---GUU-GCGGA--UG- -5'
23600 3' -51.3 NC_005261.1 + 29561 0.68 0.957935
Target:  5'- uGCAGCUGgCGCgccugcugCAgCGGCGCgUGCa -3'
miRNA:   3'- -UGUUGACgGCGaa------GUaGUUGCGgAUG- -5'
23600 3' -51.3 NC_005261.1 + 71939 0.68 0.956352
Target:  5'- -aGGCUGCCGCgcgccccacuggCGUCGGCGCgggGCg -3'
miRNA:   3'- ugUUGACGGCGaa----------GUAGUUGCGga-UG- -5'
23600 3' -51.3 NC_005261.1 + 34663 0.68 0.953903
Target:  5'- cGCAGcCUGCUGUUUguggCAGCGCgCUGCg -3'
miRNA:   3'- -UGUU-GACGGCGAAgua-GUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 130333 0.68 0.953903
Target:  5'- gACGGCccgGCCGCgcUCGggGACGCgCUGCg -3'
miRNA:   3'- -UGUUGa--CGGCGa-AGUagUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 132826 0.68 0.953903
Target:  5'- cGCGACU-UCGCuUUCGUCGACGCggccguCUACa -3'
miRNA:   3'- -UGUUGAcGGCG-AAGUAGUUGCG------GAUG- -5'
23600 3' -51.3 NC_005261.1 + 131816 0.68 0.949618
Target:  5'- gACGGCgcgccGCCGCUUgAcgCGGCGCCcGCc -3'
miRNA:   3'- -UGUUGa----CGGCGAAgUa-GUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 129207 0.68 0.949618
Target:  5'- cGCAGCUGCUucuGCUggugCGGCGCCUc- -3'
miRNA:   3'- -UGUUGACGG---CGAaguaGUUGCGGAug -5'
23600 3' -51.3 NC_005261.1 + 2426 0.68 0.945076
Target:  5'- gGCGGCggGCCGCgaucUCGgcCAGCGCCUc- -3'
miRNA:   3'- -UGUUGa-CGGCGa---AGUa-GUUGCGGAug -5'
23600 3' -51.3 NC_005261.1 + 31531 0.68 0.945076
Target:  5'- cCGGCUGCUGCUgagCGccgacUCGcACGCCUGg -3'
miRNA:   3'- uGUUGACGGCGAa--GU-----AGU-UGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 262 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 298 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 137945 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 137981 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 66116 0.69 0.935209
Target:  5'- cGCAGCgccuUGCC-CaUCGUCAGCGCCg-- -3'
miRNA:   3'- -UGUUG----ACGGcGaAGUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 126794 0.69 0.935209
Target:  5'- uGCGuCUGCCGagagCAgcgCGGCGUCUGCg -3'
miRNA:   3'- -UGUuGACGGCgaa-GUa--GUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 99663 0.69 0.92988
Target:  5'- aGCAcGCUGaCCGU--CGUCAGCGCgCUGCc -3'
miRNA:   3'- -UGU-UGAC-GGCGaaGUAGUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 89837 0.69 0.92988
Target:  5'- cGCGGCcgggccggaggGCCGCggcgUCAUCGGCGaguaCUGCa -3'
miRNA:   3'- -UGUUGa----------CGGCGa---AGUAGUUGCg---GAUG- -5'
23600 3' -51.3 NC_005261.1 + 91176 0.69 0.924285
Target:  5'- gGCAGCUcccGCCggGCUUCGcgcgcuUCGGCGCCgUGCu -3'
miRNA:   3'- -UGUUGA---CGG--CGAAGU------AGUUGCGG-AUG- -5'
23600 3' -51.3 NC_005261.1 + 22814 0.69 0.924285
Target:  5'- gGCGgcGCUGCCGCcgccgcCGUUGGCGCCggGCu -3'
miRNA:   3'- -UGU--UGACGGCGaa----GUAGUUGCGGa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.