miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 262 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 298 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 2426 0.68 0.945076
Target:  5'- gGCGGCggGCCGCgaucUCGgcCAGCGCCUc- -3'
miRNA:   3'- -UGUUGa-CGGCGa---AGUa-GUUGCGGAug -5'
23600 3' -51.3 NC_005261.1 + 3530 0.67 0.974489
Target:  5'- cGCGGCgGCCGCcUCGgcgcgCAGCGCg-GCg -3'
miRNA:   3'- -UGUUGaCGGCGaAGUa----GUUGCGgaUG- -5'
23600 3' -51.3 NC_005261.1 + 4481 0.67 0.968563
Target:  5'- cGCGGC-GCCGCggCGUa---GCCUGCg -3'
miRNA:   3'- -UGUUGaCGGCGaaGUAguugCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 4876 0.68 0.957935
Target:  5'- cACGACgGCCGCcUCAgccgCGGcCGCCUcgGCu -3'
miRNA:   3'- -UGUUGaCGGCGaAGUa---GUU-GCGGA--UG- -5'
23600 3' -51.3 NC_005261.1 + 12442 0.66 0.979558
Target:  5'- uGCGGCgucgGCCGC---GUCGGCGCCc-- -3'
miRNA:   3'- -UGUUGa---CGGCGaagUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 17953 0.73 0.772072
Target:  5'- -gAACaUGUCGCUUCGUCGAagaGCCUGu -3'
miRNA:   3'- ugUUG-ACGGCGAAGUAGUUg--CGGAUg -5'
23600 3' -51.3 NC_005261.1 + 22814 0.69 0.924285
Target:  5'- gGCGgcGCUGCCGCcgccgcCGUUGGCGCCggGCu -3'
miRNA:   3'- -UGU--UGACGGCGaa----GUAGUUGCGGa-UG- -5'
23600 3' -51.3 NC_005261.1 + 29561 0.68 0.957935
Target:  5'- uGCAGCUGgCGCgccugcugCAgCGGCGCgUGCa -3'
miRNA:   3'- -UGUUGACgGCGaa------GUaGUUGCGgAUG- -5'
23600 3' -51.3 NC_005261.1 + 29639 0.71 0.862257
Target:  5'- cGCcGCUGCCGCcggUCGggGACGCCa-- -3'
miRNA:   3'- -UGuUGACGGCGa--AGUagUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 31338 0.66 0.979558
Target:  5'- cCAGCgcGCCGCUgcggCGgcgCGugGCCUGg -3'
miRNA:   3'- uGUUGa-CGGCGAa---GUa--GUugCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 31531 0.68 0.945076
Target:  5'- cCGGCUGCUGCUgagCGccgacUCGcACGCCUGg -3'
miRNA:   3'- uGUUGACGGCGAa--GU-----AGU-UGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 31689 0.66 0.983837
Target:  5'- cGCGGCgGCgGCUgaUCGugaUCGACGCCg-- -3'
miRNA:   3'- -UGUUGaCGgCGA--AGU---AGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 32313 0.68 0.957935
Target:  5'- cGCcGCcGCCGCggCcgCGGCGCCcgGCg -3'
miRNA:   3'- -UGuUGaCGGCGaaGuaGUUGCGGa-UG- -5'
23600 3' -51.3 NC_005261.1 + 34663 0.68 0.953903
Target:  5'- cGCAGcCUGCUGUUUguggCAGCGCgCUGCg -3'
miRNA:   3'- -UGUU-GACGGCGAAgua-GUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 39359 0.73 0.731561
Target:  5'- gGCGGCaGCCGCcUCAUCGGCgGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGaAGUAGUUG-CGGaug -5'
23600 3' -51.3 NC_005261.1 + 45064 0.66 0.979558
Target:  5'- -uGGCgggGCCGCccacuuucacgUCGUCGuccgucacGCGCCUGCg -3'
miRNA:   3'- ugUUGa--CGGCGa----------AGUAGU--------UGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 45400 0.77 0.548132
Target:  5'- uGCAGCUGUCGUgccugcugCGGCGCCUGCg -3'
miRNA:   3'- -UGUUGACGGCGaagua---GUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 48931 0.67 0.971637
Target:  5'- cCAGC-GCCGCUgucUCGaCGGCGCCcGCc -3'
miRNA:   3'- uGUUGaCGGCGA---AGUaGUUGCGGaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.