miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 49963 0.66 0.979558
Target:  5'- gGCGGC-GCCGUcgUCAUCcccGGCGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGa-AGUAG---UUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 50031 0.66 0.983837
Target:  5'- cCAGCcGCCGCgcgaCGgugCAGCGCCgccGCg -3'
miRNA:   3'- uGUUGaCGGCGaa--GUa--GUUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 51920 0.67 0.973375
Target:  5'- cGCAGCgGCCGCggccuggucccgcUCGUCGccgGCGCCa-- -3'
miRNA:   3'- -UGUUGaCGGCGa------------AGUAGU---UGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 52374 0.74 0.68952
Target:  5'- cGCGGCgGCgGCcccggUCGUCAGgGCCUGCa -3'
miRNA:   3'- -UGUUGaCGgCGa----AGUAGUUgCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 52962 0.69 0.918425
Target:  5'- aGCAGC-GCCGCgcCGgugCGGCGCCgGCa -3'
miRNA:   3'- -UGUUGaCGGCGaaGUa--GUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 53016 0.76 0.60353
Target:  5'- cGCAGCUcGCCagcGCUUCcgCGGCGCCgggGCa -3'
miRNA:   3'- -UGUUGA-CGG---CGAAGuaGUUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 55130 0.66 0.977126
Target:  5'- uCAACUGCCGCUagCcgCAagaugugcgcGCGCgaGCg -3'
miRNA:   3'- uGUUGACGGCGAa-GuaGU----------UGCGgaUG- -5'
23600 3' -51.3 NC_005261.1 + 59453 0.75 0.646629
Target:  5'- aGCAGCgcgGCCGCggcgUCGgggggCAGCGCCgGCg -3'
miRNA:   3'- -UGUUGa--CGGCGa---AGUa----GUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 59662 0.7 0.899265
Target:  5'- gGCGACUGCgGCcgggUCGUCGAaGCCg-- -3'
miRNA:   3'- -UGUUGACGgCGa---AGUAGUUgCGGaug -5'
23600 3' -51.3 NC_005261.1 + 60030 0.66 0.985703
Target:  5'- -gAGCccGCCGC--CGUCGGCGCCgacgGCg -3'
miRNA:   3'- ugUUGa-CGGCGaaGUAGUUGCGGa---UG- -5'
23600 3' -51.3 NC_005261.1 + 60164 0.71 0.845799
Target:  5'- cGCcGCUGCCGUggaagcgCGUCuGCGCCgcgGCg -3'
miRNA:   3'- -UGuUGACGGCGaa-----GUAGuUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 62610 0.69 0.9123
Target:  5'- gGCAGCgguagGCgGC--CAUCAGCGCCaGCg -3'
miRNA:   3'- -UGUUGa----CGgCGaaGUAGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 63964 0.7 0.899265
Target:  5'- cGCAGCUGgUGC---GUCAGCGCCaGCg -3'
miRNA:   3'- -UGUUGACgGCGaagUAGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 65531 0.68 0.957935
Target:  5'- cCAGCgcgGCCGCgcgggCAgCAGCGCgUGCc -3'
miRNA:   3'- uGUUGa--CGGCGaa---GUaGUUGCGgAUG- -5'
23600 3' -51.3 NC_005261.1 + 66116 0.69 0.935209
Target:  5'- cGCAGCgccuUGCC-CaUCGUCAGCGCCg-- -3'
miRNA:   3'- -UGUUG----ACGGcGaAGUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 66230 0.66 0.985703
Target:  5'- aGCAGCcGCUGCUugaugcccgccgUCGUCAccagcACGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGA------------AGUAGU-----UGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 66285 0.67 0.965259
Target:  5'- cGCGGCUGUCGCagugCGUCAgGCGCg-GCa -3'
miRNA:   3'- -UGUUGACGGCGaa--GUAGU-UGCGgaUG- -5'
23600 3' -51.3 NC_005261.1 + 68794 0.66 0.985703
Target:  5'- uGCAGgUGCgGC-UCAUCccgcggacccacAACGCCUGg -3'
miRNA:   3'- -UGUUgACGgCGaAGUAG------------UUGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 71939 0.68 0.956352
Target:  5'- -aGGCUGCCGCgcgccccacuggCGUCGGCGCgggGCg -3'
miRNA:   3'- ugUUGACGGCGaa----------GUAGUUGCGga-UG- -5'
23600 3' -51.3 NC_005261.1 + 75363 0.66 0.977126
Target:  5'- aGCAGCUGCCGg--CGUaccugGACGCCcugGCg -3'
miRNA:   3'- -UGUUGACGGCgaaGUAg----UUGCGGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.