miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 137981 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 137945 0.68 0.940274
Target:  5'- gGCGGCUGCgGCggCGgcugcggCGGCGgCUGCg -3'
miRNA:   3'- -UGUUGACGgCGaaGUa------GUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 136490 0.67 0.968563
Target:  5'- aGCAGCgaGCaGCUcggCGcCGACGCCUGCu -3'
miRNA:   3'- -UGUUGa-CGgCGAa--GUaGUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 135843 0.69 0.9123
Target:  5'- gGCuuGCgugGCgGgCUUCAUCGACGCCUuggACa -3'
miRNA:   3'- -UGu-UGa--CGgC-GAAGUAGUUGCGGA---UG- -5'
23600 3' -51.3 NC_005261.1 + 135023 0.71 0.862257
Target:  5'- cGCAcGCgGCCGCggCGgcgaggcCGACGCCUGCg -3'
miRNA:   3'- -UGU-UGaCGGCGaaGUa------GUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 133864 0.7 0.889527
Target:  5'- cGCGACUGCCGCgccuaccuGugGUCUGCg -3'
miRNA:   3'- -UGUUGACGGCGaaguag--UugCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 133351 0.73 0.762126
Target:  5'- cGCGgcGCUGCCGCgcagggCuUCGGCuGCCUGCg -3'
miRNA:   3'- -UGU--UGACGGCGaa----GuAGUUG-CGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 132962 0.67 0.971637
Target:  5'- cCGACgugGCCGcCUUCGUCGccGCGCaCcGCg -3'
miRNA:   3'- uGUUGa--CGGC-GAAGUAGU--UGCG-GaUG- -5'
23600 3' -51.3 NC_005261.1 + 132826 0.68 0.953903
Target:  5'- cGCGACU-UCGCuUUCGUCGACGCggccguCUACa -3'
miRNA:   3'- -UGUUGAcGGCG-AAGUAGUUGCG------GAUG- -5'
23600 3' -51.3 NC_005261.1 + 131816 0.68 0.949618
Target:  5'- gACGGCgcgccGCCGCUUgAcgCGGCGCCcGCc -3'
miRNA:   3'- -UGUUGa----CGGCGAAgUa-GUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 131417 0.66 0.985703
Target:  5'- cGCcGCUGCCGg--CAgCGGCGCCgGCg -3'
miRNA:   3'- -UGuUGACGGCgaaGUaGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 130333 0.68 0.953903
Target:  5'- gACGGCccgGCCGCgcUCGggGACGCgCUGCg -3'
miRNA:   3'- -UGUUGa--CGGCGa-AGUagUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 129207 0.68 0.949618
Target:  5'- cGCAGCUGCUucuGCUggugCGGCGCCUc- -3'
miRNA:   3'- -UGUUGACGG---CGAaguaGUUGCGGAug -5'
23600 3' -51.3 NC_005261.1 + 127682 0.69 0.918425
Target:  5'- gGCGGCgGCCGCUgcccCggCGGCGCCg-- -3'
miRNA:   3'- -UGUUGaCGGCGAa---GuaGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 127220 0.67 0.971637
Target:  5'- cGCGGCUuaaGCCGCgcgCGUCGAaaaaGCCUu- -3'
miRNA:   3'- -UGUUGA---CGGCGaa-GUAGUUg---CGGAug -5'
23600 3' -51.3 NC_005261.1 + 126794 0.69 0.935209
Target:  5'- uGCGuCUGCCGagagCAgcgCGGCGUCUGCg -3'
miRNA:   3'- -UGUuGACGGCgaa-GUa--GUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 126500 0.67 0.961718
Target:  5'- cCAGCUGCCGCaggcggUCugccUgGGCGCCcGCg -3'
miRNA:   3'- uGUUGACGGCGa-----AGu---AgUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 124414 0.73 0.74186
Target:  5'- uGCAGCgccaugGCCuGCUUCAUCGcGCGCCgccACa -3'
miRNA:   3'- -UGUUGa-----CGG-CGAAGUAGU-UGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 122686 0.66 0.983837
Target:  5'- uCAGCUGCgccUGCUcCAUCGccGCGCCgccgGCc -3'
miRNA:   3'- uGUUGACG---GCGAaGUAGU--UGCGGa---UG- -5'
23600 3' -51.3 NC_005261.1 + 118070 0.66 0.983837
Target:  5'- gGCAGCgGCCGCagCcgCGcuCGUCUGCu -3'
miRNA:   3'- -UGUUGaCGGCGaaGuaGUu-GCGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.