miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 117447 0.69 0.912925
Target:  5'- gGCGGCUGCUGCagaaggugcggcaggUCGgcggCGACGCgCUGCu -3'
miRNA:   3'- -UGUUGACGGCGa--------------AGUa---GUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 116921 0.66 0.985703
Target:  5'- gACAGCcGCCGCgggCugcUgGACGCCUuccGCg -3'
miRNA:   3'- -UGUUGaCGGCGaa-Gu--AgUUGCGGA---UG- -5'
23600 3' -51.3 NC_005261.1 + 115292 0.73 0.74186
Target:  5'- gGCAGCaGCCGCaacgCGUCGGCGCacguCUGCg -3'
miRNA:   3'- -UGUUGaCGGCGaa--GUAGUUGCG----GAUG- -5'
23600 3' -51.3 NC_005261.1 + 112971 0.76 0.613214
Target:  5'- cACGGCgGCCGCcaccgccgccaucUUCGUCAACGCCa-- -3'
miRNA:   3'- -UGUUGaCGGCG-------------AAGUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 110975 0.66 0.977126
Target:  5'- uGCAugUacGCCGcCUUCGU--GCGCCUGg -3'
miRNA:   3'- -UGUugA--CGGC-GAAGUAguUGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 110392 0.75 0.646629
Target:  5'- uGCGGCUGgaCCGCUUCu---ACGCCUGCc -3'
miRNA:   3'- -UGUUGAC--GGCGAAGuaguUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 108741 0.66 0.983837
Target:  5'- aGCGGCggcGCCGCggcgUCcgCGGCGCgCcGCg -3'
miRNA:   3'- -UGUUGa--CGGCGa---AGuaGUUGCG-GaUG- -5'
23600 3' -51.3 NC_005261.1 + 108403 0.69 0.905913
Target:  5'- cCAGCaGCCGCgcCA-CcGCGCCUGCg -3'
miRNA:   3'- uGUUGaCGGCGaaGUaGuUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 107713 0.67 0.965259
Target:  5'- aACGucGCUGCCGCggCA--GGCGgCUGCg -3'
miRNA:   3'- -UGU--UGACGGCGaaGUagUUGCgGAUG- -5'
23600 3' -51.3 NC_005261.1 + 106894 0.69 0.924285
Target:  5'- uGCAGC-GCCuGCgUCGUCcGCGCCgcgGCg -3'
miRNA:   3'- -UGUUGaCGG-CGaAGUAGuUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 106421 0.66 0.977126
Target:  5'- uGCAGCggGCCGCg--GUCcACGCCcGCc -3'
miRNA:   3'- -UGUUGa-CGGCGaagUAGuUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 104671 0.71 0.845799
Target:  5'- gGCGugUGCUGCgg---CAGCGCCUGg -3'
miRNA:   3'- -UGUugACGGCGaaguaGUUGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 104341 0.66 0.985703
Target:  5'- aGCGGCcgGCCGUcgCG-CAGCGCCgcccGCg -3'
miRNA:   3'- -UGUUGa-CGGCGaaGUaGUUGCGGa---UG- -5'
23600 3' -51.3 NC_005261.1 + 103485 0.74 0.68952
Target:  5'- cCAGCUGgCGCaagacgUCGUCGGCGCCgcggACg -3'
miRNA:   3'- uGUUGACgGCGa-----AGUAGUUGCGGa---UG- -5'
23600 3' -51.3 NC_005261.1 + 102914 0.76 0.560801
Target:  5'- cGCAGCgccuccGCCGCUUCGcgCAGCGCCg-- -3'
miRNA:   3'- -UGUUGa-----CGGCGAAGUa-GUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 102486 0.67 0.971637
Target:  5'- uCGGCgcGCCGCcgCGcCAGCGCCUGg -3'
miRNA:   3'- uGUUGa-CGGCGaaGUaGUUGCGGAUg -5'
23600 3' -51.3 NC_005261.1 + 101407 0.7 0.899265
Target:  5'- aGCAGC-GCCGCUUgCGUCAcgACGUCgGCc -3'
miRNA:   3'- -UGUUGaCGGCGAA-GUAGU--UGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 101213 0.72 0.801039
Target:  5'- cCAGCUGCCGCcgcagcgCGUCGaggugGCGCCUcaGCu -3'
miRNA:   3'- uGUUGACGGCGaa-----GUAGU-----UGCGGA--UG- -5'
23600 3' -51.3 NC_005261.1 + 100101 0.69 0.905913
Target:  5'- cGCcGCUGCCGCcgccCAgCGGCGCCcGCa -3'
miRNA:   3'- -UGuUGACGGCGaa--GUaGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 99663 0.69 0.92988
Target:  5'- aGCAcGCUGaCCGU--CGUCAGCGCgCUGCc -3'
miRNA:   3'- -UGU-UGAC-GGCGaaGUAGUUGCG-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.