miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 3' -51.3 NC_005261.1 + 99473 0.69 0.905913
Target:  5'- gGCGGCgcugGCCGCUgCGgcCAGCGCCgccGCg -3'
miRNA:   3'- -UGUUGa---CGGCGAaGUa-GUUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 99405 0.71 0.82848
Target:  5'- gGCGGCUGCCGCacgagCGUgAACGUC-ACg -3'
miRNA:   3'- -UGUUGACGGCGaa---GUAgUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 99105 0.66 0.981791
Target:  5'- aGCGGCuUGCuCGCg--AUCAGCGCCg-- -3'
miRNA:   3'- -UGUUG-ACG-GCGaagUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 93737 0.66 0.979558
Target:  5'- gGCAGC-GCgCGCUUCGuacUCGGCgGCCcGCg -3'
miRNA:   3'- -UGUUGaCG-GCGAAGU---AGUUG-CGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 91427 0.67 0.968563
Target:  5'- cGCGACgccGCCGCg--GUgAACGCgCUGCg -3'
miRNA:   3'- -UGUUGa--CGGCGaagUAgUUGCG-GAUG- -5'
23600 3' -51.3 NC_005261.1 + 91176 0.69 0.924285
Target:  5'- gGCAGCUcccGCCggGCUUCGcgcgcuUCGGCGCCgUGCu -3'
miRNA:   3'- -UGUUGA---CGG--CGAAGU------AGUUGCGG-AUG- -5'
23600 3' -51.3 NC_005261.1 + 91055 1.11 0.004859
Target:  5'- aACAACUGCCGCUUCAUCAACGCCUACg -3'
miRNA:   3'- -UGUUGACGGCGAAGUAGUUGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 89837 0.69 0.92988
Target:  5'- cGCGGCcgggccggaggGCCGCggcgUCAUCGGCGaguaCUGCa -3'
miRNA:   3'- -UGUUGa----------CGGCGa---AGUAGUUGCg---GAUG- -5'
23600 3' -51.3 NC_005261.1 + 89395 0.73 0.772072
Target:  5'- uGCGAcCUGCCGCcggccUUCcUCGGCGCgUGCg -3'
miRNA:   3'- -UGUU-GACGGCG-----AAGuAGUUGCGgAUG- -5'
23600 3' -51.3 NC_005261.1 + 86721 0.7 0.89236
Target:  5'- cCAGCUucGCCGCcUCGUCcgccGCGcCCUGCa -3'
miRNA:   3'- uGUUGA--CGGCGaAGUAGu---UGC-GGAUG- -5'
23600 3' -51.3 NC_005261.1 + 85560 0.67 0.965259
Target:  5'- uGCGGC-GCCGCgagguUCGGCGCCgcgACc -3'
miRNA:   3'- -UGUUGaCGGCGaagu-AGUUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 83196 0.72 0.818612
Target:  5'- cGCAGCUGCCGCgugaCGUggucgcaggugcaCAGCGCCa-- -3'
miRNA:   3'- -UGUUGACGGCGaa--GUA-------------GUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 83081 0.67 0.971637
Target:  5'- gGCGGCcGgCGCUUC--CAGCGCCUccaGCg -3'
miRNA:   3'- -UGUUGaCgGCGAAGuaGUUGCGGA---UG- -5'
23600 3' -51.3 NC_005261.1 + 82338 0.66 0.981791
Target:  5'- cGCGuagcGCUGCCgGCgcaCGUCGGCGUCgGCg -3'
miRNA:   3'- -UGU----UGACGG-CGaa-GUAGUUGCGGaUG- -5'
23600 3' -51.3 NC_005261.1 + 81683 0.71 0.862257
Target:  5'- cACGACUGCCGCccgUCcgggccCGGCGCCg-- -3'
miRNA:   3'- -UGUUGACGGCGa--AGua----GUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 76692 0.66 0.977126
Target:  5'- gACGACgccgGCCuguuCUUCGUCGGCGUCg-- -3'
miRNA:   3'- -UGUUGa---CGGc---GAAGUAGUUGCGGaug -5'
23600 3' -51.3 NC_005261.1 + 76603 0.67 0.972804
Target:  5'- cGCGcgcGCUGCCGCccgccgccccgcUgccCAUCAacaucgaccacgcgaGCGCCUGCg -3'
miRNA:   3'- -UGU---UGACGGCG------------Aa--GUAGU---------------UGCGGAUG- -5'
23600 3' -51.3 NC_005261.1 + 75363 0.66 0.977126
Target:  5'- aGCAGCUGCCGg--CGUaccugGACGCCcugGCg -3'
miRNA:   3'- -UGUUGACGGCgaaGUAg----UUGCGGa--UG- -5'
23600 3' -51.3 NC_005261.1 + 71939 0.68 0.956352
Target:  5'- -aGGCUGCCGCgcgccccacuggCGUCGGCGCgggGCg -3'
miRNA:   3'- ugUUGACGGCGaa----------GUAGUUGCGga-UG- -5'
23600 3' -51.3 NC_005261.1 + 68794 0.66 0.985703
Target:  5'- uGCAGgUGCgGC-UCAUCccgcggacccacAACGCCUGg -3'
miRNA:   3'- -UGUUgACGgCGaAGUAG------------UUGCGGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.