Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23600 | 3' | -51.3 | NC_005261.1 | + | 132826 | 0.68 | 0.953903 |
Target: 5'- cGCGACU-UCGCuUUCGUCGACGCggccguCUACa -3' miRNA: 3'- -UGUUGAcGGCG-AAGUAGUUGCG------GAUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 130333 | 0.68 | 0.953903 |
Target: 5'- gACGGCccgGCCGCgcUCGggGACGCgCUGCg -3' miRNA: 3'- -UGUUGa--CGGCGa-AGUagUUGCG-GAUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 34663 | 0.68 | 0.953903 |
Target: 5'- cGCAGcCUGCUGUUUguggCAGCGCgCUGCg -3' miRNA: 3'- -UGUU-GACGGCGAAgua-GUUGCG-GAUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 131816 | 0.68 | 0.949618 |
Target: 5'- gACGGCgcgccGCCGCUUgAcgCGGCGCCcGCc -3' miRNA: 3'- -UGUUGa----CGGCGAAgUa-GUUGCGGaUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 66285 | 0.67 | 0.965259 |
Target: 5'- cGCGGCUGUCGCagugCGUCAgGCGCg-GCa -3' miRNA: 3'- -UGUUGACGGCGaa--GUAGU-UGCGgaUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 85560 | 0.67 | 0.965259 |
Target: 5'- uGCGGC-GCCGCgagguUCGGCGCCgcgACc -3' miRNA: 3'- -UGUUGaCGGCGaagu-AGUUGCGGa--UG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 76603 | 0.67 | 0.972804 |
Target: 5'- cGCGcgcGCUGCCGCccgccgccccgcUgccCAUCAacaucgaccacgcgaGCGCCUGCg -3' miRNA: 3'- -UGU---UGACGGCG------------Aa--GUAGU---------------UGCGGAUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 132962 | 0.67 | 0.971637 |
Target: 5'- cCGACgugGCCGcCUUCGUCGccGCGCaCcGCg -3' miRNA: 3'- uGUUGa--CGGC-GAAGUAGU--UGCG-GaUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 102486 | 0.67 | 0.971637 |
Target: 5'- uCGGCgcGCCGCcgCGcCAGCGCCUGg -3' miRNA: 3'- uGUUGa-CGGCGaaGUaGUUGCGGAUg -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 83081 | 0.67 | 0.971637 |
Target: 5'- gGCGGCcGgCGCUUC--CAGCGCCUccaGCg -3' miRNA: 3'- -UGUUGaCgGCGAAGuaGUUGCGGA---UG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 48931 | 0.67 | 0.971637 |
Target: 5'- cCAGC-GCCGCUgucUCGaCGGCGCCcGCc -3' miRNA: 3'- uGUUGaCGGCGA---AGUaGUUGCGGaUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 127220 | 0.67 | 0.971637 |
Target: 5'- cGCGGCUuaaGCCGCgcgCGUCGAaaaaGCCUu- -3' miRNA: 3'- -UGUUGA---CGGCGaa-GUAGUUg---CGGAug -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 136490 | 0.67 | 0.968563 |
Target: 5'- aGCAGCgaGCaGCUcggCGcCGACGCCUGCu -3' miRNA: 3'- -UGUUGa-CGgCGAa--GUaGUUGCGGAUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 91427 | 0.67 | 0.968563 |
Target: 5'- cGCGACgccGCCGCg--GUgAACGCgCUGCg -3' miRNA: 3'- -UGUUGa--CGGCGaagUAgUUGCG-GAUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 4481 | 0.67 | 0.968563 |
Target: 5'- cGCGGC-GCCGCggCGUa---GCCUGCg -3' miRNA: 3'- -UGUUGaCGGCGaaGUAguugCGGAUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 107713 | 0.67 | 0.965259 |
Target: 5'- aACGucGCUGCCGCggCA--GGCGgCUGCg -3' miRNA: 3'- -UGU--UGACGGCGaaGUagUUGCgGAUG- -5' |
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23600 | 3' | -51.3 | NC_005261.1 | + | 129207 | 0.68 | 0.949618 |
Target: 5'- cGCAGCUGCUucuGCUggugCGGCGCCUc- -3' miRNA: 3'- -UGUUGACGG---CGAaguaGUUGCGGAug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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