miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 122155 0.66 0.946444
Target:  5'- cGGcCGACGccaGCUCGaccgcgGcCACGAUGGCg -3'
miRNA:   3'- aCCaGCUGCa--CGAGUa-----C-GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 112694 0.66 0.946444
Target:  5'- gGcGUCGAggcCGUGCcCGUGCAgGACcuGGCg -3'
miRNA:   3'- aC-CAGCU---GCACGaGUACGUgCUG--CUG- -5'
23600 5' -54.5 NC_005261.1 + 97749 0.66 0.946444
Target:  5'- gGGgcggGGCGgGCUCGgcgGCGCGGcCGGCa -3'
miRNA:   3'- aCCag--CUGCaCGAGUa--CGUGCU-GCUG- -5'
23600 5' -54.5 NC_005261.1 + 43656 0.66 0.941899
Target:  5'- cGGU-GACGUGCUCuucgagucgcccAUGCagcggcuccACGGCGAg -3'
miRNA:   3'- aCCAgCUGCACGAG------------UACG---------UGCUGCUg -5'
23600 5' -54.5 NC_005261.1 + 62498 0.66 0.941431
Target:  5'- aGGUCGAacgggccCGUGUUC-UGCAgGAaGGCg -3'
miRNA:   3'- aCCAGCU-------GCACGAGuACGUgCUgCUG- -5'
23600 5' -54.5 NC_005261.1 + 113252 0.66 0.937111
Target:  5'- aGuUCGcGCGcggGCUCAUGCcguuCGACGGCu -3'
miRNA:   3'- aCcAGC-UGCa--CGAGUACGu---GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 34021 0.66 0.937111
Target:  5'- --cUCGACGUGaUCAccgGCGCGGCGcGCg -3'
miRNA:   3'- accAGCUGCACgAGUa--CGUGCUGC-UG- -5'
23600 5' -54.5 NC_005261.1 + 62295 0.66 0.937111
Target:  5'- -cGUCGGCGccGCgCGggcGCGCGGCGGCc -3'
miRNA:   3'- acCAGCUGCa-CGaGUa--CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 136999 0.66 0.937111
Target:  5'- aGGUCGAuCGUGCggcCGgagaGCGCGgccagcagaACGGCg -3'
miRNA:   3'- aCCAGCU-GCACGa--GUa---CGUGC---------UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 29334 0.66 0.937111
Target:  5'- cGGcCG-CGUGCgcuUCGgcgGCGCGgGCGACa -3'
miRNA:   3'- aCCaGCuGCACG---AGUa--CGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 64762 0.66 0.932079
Target:  5'- uUGGccUCGGCcaGCUCGcgGCGCGccACGACg -3'
miRNA:   3'- -ACC--AGCUGcaCGAGUa-CGUGC--UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 51795 0.66 0.932079
Target:  5'- cUGGcCGugGccaUGCUCGUGCuGCGGCu-- -3'
miRNA:   3'- -ACCaGCugC---ACGAGUACG-UGCUGcug -5'
23600 5' -54.5 NC_005261.1 + 59920 0.66 0.932079
Target:  5'- aGGUCGACGaGCUC--GC-CGuCGGCc -3'
miRNA:   3'- aCCAGCUGCaCGAGuaCGuGCuGCUG- -5'
23600 5' -54.5 NC_005261.1 + 63782 0.66 0.932079
Target:  5'- aGGUCcACGUGCgc--GCGCGGCuGCg -3'
miRNA:   3'- aCCAGcUGCACGaguaCGUGCUGcUG- -5'
23600 5' -54.5 NC_005261.1 + 109807 0.66 0.932079
Target:  5'- cGGcCGGCGccGCUUccGcCGCGGCGGCc -3'
miRNA:   3'- aCCaGCUGCa-CGAGuaC-GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 10868 0.66 0.928941
Target:  5'- aGGaCGACGUGUUCuuccccgagcccgGCgccaACGGCGGCg -3'
miRNA:   3'- aCCaGCUGCACGAGua-----------CG----UGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 113895 0.66 0.926801
Target:  5'- cGG-CGACGcgGCgg--GCGCGAUGGCc -3'
miRNA:   3'- aCCaGCUGCa-CGaguaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 77404 0.66 0.926801
Target:  5'- cGG-CGACuauGUGUaCGUGC-CGACGGCc -3'
miRNA:   3'- aCCaGCUG---CACGaGUACGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 59182 0.66 0.926801
Target:  5'- -cGcCGAC-UGCUCGUagGaCACGACGACg -3'
miRNA:   3'- acCaGCUGcACGAGUA--C-GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 31656 0.66 0.926259
Target:  5'- cGGUCGaguaccucugccuGCG-GCUgGccgcgGCGCGGCGGCg -3'
miRNA:   3'- aCCAGC-------------UGCaCGAgUa----CGUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.