Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 104200 | 0.68 | 0.860777 |
Target: 5'- gGGaCGGCGUccaggcGCUCGcGCGCGGCGcGCa -3' miRNA: 3'- aCCaGCUGCA------CGAGUaCGUGCUGC-UG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 30252 | 0.68 | 0.868416 |
Target: 5'- cGGuacUCGACGcGCg---GCGCGGCGGCc -3' miRNA: 3'- aCC---AGCUGCaCGaguaCGUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 96130 | 0.68 | 0.868416 |
Target: 5'- aUGGUCGACcUGCggCGgcgGCACGAgaaGGCc -3' miRNA: 3'- -ACCAGCUGcACGa-GUa--CGUGCUg--CUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 59766 | 0.68 | 0.875838 |
Target: 5'- aGGccUCcAUGUGCUCGgccGCAgCGACGGCg -3' miRNA: 3'- aCC--AGcUGCACGAGUa--CGU-GCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 85916 | 0.68 | 0.875838 |
Target: 5'- gUGGccugcUCGAcCGUGCUC-UGgAUGGCGGCc -3' miRNA: 3'- -ACC-----AGCU-GCACGAGuACgUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 13352 | 0.68 | 0.875838 |
Target: 5'- cGGUCGGCG-Gag---GCugGGCGGCa -3' miRNA: 3'- aCCAGCUGCaCgaguaCGugCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 75218 | 0.68 | 0.880183 |
Target: 5'- gUGG-CGGCGcUGCaguccagcgggcgCAUGUACGugGGCa -3' miRNA: 3'- -ACCaGCUGC-ACGa------------GUACGUGCugCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 76663 | 0.69 | 0.801751 |
Target: 5'- aGGUCGGCGccgUGCUgGcccucGC-CGACGACg -3' miRNA: 3'- aCCAGCUGC---ACGAgUa----CGuGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 116245 | 0.69 | 0.810724 |
Target: 5'- aGGUCGACG-GCgauuggggucaUCAcGCcCGGCGGCg -3' miRNA: 3'- aCCAGCUGCaCG-----------AGUaCGuGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 121057 | 0.69 | 0.819531 |
Target: 5'- cGGUUGugGcGCgcggUGUGCGCGGCGcCg -3' miRNA: 3'- aCCAGCugCaCGa---GUACGUGCUGCuG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 13095 | 0.69 | 0.828162 |
Target: 5'- cGGgCGGCGggcucgGCUCGgggGCGuCGGCGGCc -3' miRNA: 3'- aCCaGCUGCa-----CGAGUa--CGU-GCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 50989 | 0.69 | 0.828162 |
Target: 5'- cGGcCGACG-GCg---GCGCGugGGCg -3' miRNA: 3'- aCCaGCUGCaCGaguaCGUGCugCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 111727 | 0.69 | 0.83661 |
Target: 5'- gGGUCGACGaGCgCGUGUACG-UGAa -3' miRNA: 3'- aCCAGCUGCaCGaGUACGUGCuGCUg -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 93561 | 0.69 | 0.83661 |
Target: 5'- cGGUCGACG-GCg---GUGCGGCGGg -3' miRNA: 3'- aCCAGCUGCaCGaguaCGUGCUGCUg -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 118561 | 0.7 | 0.79262 |
Target: 5'- aGGaCGcCGUGCccgCGcGCGCGGCGGCg -3' miRNA: 3'- aCCaGCuGCACGa--GUaCGUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 65808 | 0.7 | 0.78334 |
Target: 5'- gGGUCGGgGUGC-CcgG-GCGGCGGCg -3' miRNA: 3'- aCCAGCUgCACGaGuaCgUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 79352 | 0.71 | 0.725056 |
Target: 5'- cGGUCGAUGUcguagaaccggaGCUCGUGCAgcUGguuGCGGCg -3' miRNA: 3'- aCCAGCUGCA------------CGAGUACGU--GC---UGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 105863 | 0.71 | 0.735032 |
Target: 5'- cGGUCGGCGaUGCgguugggCAggUGCACGAuCGAg -3' miRNA: 3'- aCCAGCUGC-ACGa------GU--ACGUGCU-GCUg -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 135080 | 0.71 | 0.744916 |
Target: 5'- cGG-CGGCGgGCUCGcgGCcCGGCGGCg -3' miRNA: 3'- aCCaGCUGCaCGAGUa-CGuGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 96851 | 0.72 | 0.663804 |
Target: 5'- gGGUCGACGggggGCUCGggggGCGCGgguaGCGuGCg -3' miRNA: 3'- aCCAGCUGCa---CGAGUa---CGUGC----UGC-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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