miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 93561 0.69 0.83661
Target:  5'- cGGUCGACG-GCg---GUGCGGCGGg -3'
miRNA:   3'- aCCAGCUGCaCGaguaCGUGCUGCUg -5'
23600 5' -54.5 NC_005261.1 + 116245 0.69 0.810724
Target:  5'- aGGUCGACG-GCgauuggggucaUCAcGCcCGGCGGCg -3'
miRNA:   3'- aCCAGCUGCaCG-----------AGUaCGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 50989 0.69 0.828162
Target:  5'- cGGcCGACG-GCg---GCGCGugGGCg -3'
miRNA:   3'- aCCaGCUGCaCGaguaCGUGCugCUG- -5'
23600 5' -54.5 NC_005261.1 + 111727 0.69 0.83661
Target:  5'- gGGUCGACGaGCgCGUGUACG-UGAa -3'
miRNA:   3'- aCCAGCUGCaCGaGUACGUGCuGCUg -5'
23600 5' -54.5 NC_005261.1 + 13352 0.68 0.875838
Target:  5'- cGGUCGGCG-Gag---GCugGGCGGCa -3'
miRNA:   3'- aCCAGCUGCaCgaguaCGugCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 85916 0.68 0.875838
Target:  5'- gUGGccugcUCGAcCGUGCUC-UGgAUGGCGGCc -3'
miRNA:   3'- -ACC-----AGCU-GCACGAGuACgUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 96130 0.68 0.868416
Target:  5'- aUGGUCGACcUGCggCGgcgGCACGAgaaGGCc -3'
miRNA:   3'- -ACCAGCUGcACGa-GUa--CGUGCUg--CUG- -5'
23600 5' -54.5 NC_005261.1 + 59766 0.68 0.875838
Target:  5'- aGGccUCcAUGUGCUCGgccGCAgCGACGGCg -3'
miRNA:   3'- aCC--AGcUGCACGAGUa--CGU-GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 75218 0.68 0.880183
Target:  5'- gUGG-CGGCGcUGCaguccagcgggcgCAUGUACGugGGCa -3'
miRNA:   3'- -ACCaGCUGC-ACGa------------GUACGUGCugCUG- -5'
23600 5' -54.5 NC_005261.1 + 19820 0.68 0.852925
Target:  5'- cGGUCGAUGcaaaaGUUCAgcGCGCGcGCGGCg -3'
miRNA:   3'- aCCAGCUGCa----CGAGUa-CGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 104200 0.68 0.860777
Target:  5'- gGGaCGGCGUccaggcGCUCGcGCGCGGCGcGCa -3'
miRNA:   3'- aCCaGCUGCA------CGAGUaCGUGCUGC-UG- -5'
23600 5' -54.5 NC_005261.1 + 1290 0.68 0.860777
Target:  5'- aGGcCGGCGggGCUCccGUcgccgGCGGCGGCa -3'
miRNA:   3'- aCCaGCUGCa-CGAGuaCG-----UGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 130474 0.68 0.860001
Target:  5'- cGGcucgCGGCGUGcCUCGgcgGCGagggcccCGACGACg -3'
miRNA:   3'- aCCa---GCUGCAC-GAGUa--CGU-------GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 30252 0.68 0.868416
Target:  5'- cGGuacUCGACGcGCg---GCGCGGCGGCc -3'
miRNA:   3'- aCC---AGCUGCaCGaguaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 42465 0.68 0.857661
Target:  5'- aGG-CGGCGgcuaGCUUuagguagacguuuUGCGCGGCGACg -3'
miRNA:   3'- aCCaGCUGCa---CGAGu------------ACGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 5242 0.67 0.909492
Target:  5'- aGGUCGAgCGUggccgGCUCGUGCcCGcCGGg -3'
miRNA:   3'- aCCAGCU-GCA-----CGAGUACGuGCuGCUg -5'
23600 5' -54.5 NC_005261.1 + 132106 0.67 0.915507
Target:  5'- cGGccgCGACGcGCUCGUggagcgggacGCGCGGCuGACc -3'
miRNA:   3'- aCCa--GCUGCaCGAGUA----------CGUGCUG-CUG- -5'
23600 5' -54.5 NC_005261.1 + 65585 0.67 0.915507
Target:  5'- cUGGUCcGCGaGCUCcUGCucgccgggguCGGCGACg -3'
miRNA:   3'- -ACCAGcUGCaCGAGuACGu---------GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 64913 0.67 0.911927
Target:  5'- gUGGUucagcgCGGCGUGCUCcUGCucgccgcccaggggcGCGuGCGGCa -3'
miRNA:   3'- -ACCA------GCUGCACGAGuACG---------------UGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 24369 0.67 0.909492
Target:  5'- -cGUCGGCgGUGCUCccgguggGCucguCGGCGGCg -3'
miRNA:   3'- acCAGCUG-CACGAGua-----CGu---GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.