miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 64913 0.67 0.911927
Target:  5'- gUGGUucagcgCGGCGUGCUCcUGCucgccgcccaggggcGCGuGCGGCa -3'
miRNA:   3'- -ACCA------GCUGCACGAGuACG---------------UGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 24369 0.67 0.909492
Target:  5'- -cGUCGGCgGUGCUCccgguggGCucguCGGCGGCg -3'
miRNA:   3'- acCAGCUG-CACGAGua-----CGu---GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 5242 0.67 0.909492
Target:  5'- aGGUCGAgCGUggccgGCUCGUGCcCGcCGGg -3'
miRNA:   3'- aCCAGCU-GCA-----CGAGUACGuGCuGCUg -5'
23600 5' -54.5 NC_005261.1 + 54984 0.67 0.894742
Target:  5'- aGGUcuuuacggccacgcCGGCG-GcCUCGUGCACaACGACg -3'
miRNA:   3'- aCCA--------------GCUGCaC-GAGUACGUGcUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 112447 0.67 0.900665
Target:  5'- cUGGcacugCGACGUGCgggccgugcuaaaCAUGCGCGgcaugcucgcccGCGACg -3'
miRNA:   3'- -ACCa----GCUGCACGa------------GUACGUGC------------UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 17148 0.67 0.917844
Target:  5'- gGGUCGACGUagaccgucacccgcgGCgcgggCGUGggcagcccugcCGCGGCGGCg -3'
miRNA:   3'- aCCAGCUGCA---------------CGa----GUAC-----------GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 548 0.67 0.903235
Target:  5'- cGGaCGGCG-GCUCGgccgccGCGCGGUGACa -3'
miRNA:   3'- aCCaGCUGCaCGAGUa-----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 138219 0.67 0.903235
Target:  5'- cGGaCGGCG-GCUCGgccgccGCGCGGUGACa -3'
miRNA:   3'- aCCaGCUGCaCGAGUa-----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 97749 0.66 0.946444
Target:  5'- gGGgcggGGCGgGCUCGgcgGCGCGGcCGGCa -3'
miRNA:   3'- aCCag--CUGCaCGAGUa--CGUGCU-GCUG- -5'
23600 5' -54.5 NC_005261.1 + 136999 0.66 0.937111
Target:  5'- aGGUCGAuCGUGCggcCGgagaGCGCGgccagcagaACGGCg -3'
miRNA:   3'- aCCAGCU-GCACGa--GUa---CGUGC---------UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 113252 0.66 0.937111
Target:  5'- aGuUCGcGCGcggGCUCAUGCcguuCGACGGCu -3'
miRNA:   3'- aCcAGC-UGCa--CGAGUACGu---GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 109807 0.66 0.932079
Target:  5'- cGGcCGGCGccGCUUccGcCGCGGCGGCc -3'
miRNA:   3'- aCCaGCUGCa-CGAGuaC-GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 63782 0.66 0.932079
Target:  5'- aGGUCcACGUGCgc--GCGCGGCuGCg -3'
miRNA:   3'- aCCAGcUGCACGaguaCGUGCUGcUG- -5'
23600 5' -54.5 NC_005261.1 + 29334 0.66 0.937111
Target:  5'- cGGcCG-CGUGCgcuUCGgcgGCGCGgGCGACa -3'
miRNA:   3'- aCCaGCuGCACG---AGUa--CGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 59920 0.66 0.932079
Target:  5'- aGGUCGACGaGCUC--GC-CGuCGGCc -3'
miRNA:   3'- aCCAGCUGCaCGAGuaCGuGCuGCUG- -5'
23600 5' -54.5 NC_005261.1 + 51795 0.66 0.932079
Target:  5'- cUGGcCGugGccaUGCUCGUGCuGCGGCu-- -3'
miRNA:   3'- -ACCaGCugC---ACGAGUACG-UGCUGcug -5'
23600 5' -54.5 NC_005261.1 + 64762 0.66 0.932079
Target:  5'- uUGGccUCGGCcaGCUCGcgGCGCGccACGACg -3'
miRNA:   3'- -ACC--AGCUGcaCGAGUa-CGUGC--UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 107784 0.66 0.926259
Target:  5'- cGGUCGAaccaCGUuaggaggGcCUCGcGCGCGGCGGCc -3'
miRNA:   3'- aCCAGCU----GCA-------C-GAGUaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 31656 0.66 0.926259
Target:  5'- cGGUCGaguaccucugccuGCG-GCUgGccgcgGCGCGGCGGCg -3'
miRNA:   3'- aCCAGC-------------UGCaCGAgUa----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 19274 0.66 0.921276
Target:  5'- gGGUaCGccaGCGU-CUCGUaCGCGACGACg -3'
miRNA:   3'- aCCA-GC---UGCAcGAGUAcGUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.