miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 19274 0.66 0.921276
Target:  5'- gGGUaCGccaGCGU-CUCGUaCGCGACGACg -3'
miRNA:   3'- aCCA-GC---UGCAcGAGUAcGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 90793 0.66 0.921276
Target:  5'- cGGcCGGCGcGCgcuaccgCGUGCgcuggucuACGGCGACa -3'
miRNA:   3'- aCCaGCUGCaCGa------GUACG--------UGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 31656 0.66 0.926259
Target:  5'- cGGUCGaguaccucugccuGCG-GCUgGccgcgGCGCGGCGGCg -3'
miRNA:   3'- aCCAGC-------------UGCaCGAgUa----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 107784 0.66 0.926259
Target:  5'- cGGUCGAaccaCGUuaggaggGcCUCGcGCGCGGCGGCc -3'
miRNA:   3'- aCCAGCU----GCA-------C-GAGUaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 59182 0.66 0.926801
Target:  5'- -cGcCGAC-UGCUCGUagGaCACGACGACg -3'
miRNA:   3'- acCaGCUGcACGAGUA--C-GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 77404 0.66 0.926801
Target:  5'- cGG-CGACuauGUGUaCGUGC-CGACGGCc -3'
miRNA:   3'- aCCaGCUG---CACGaGUACGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 113895 0.66 0.926801
Target:  5'- cGG-CGACGcgGCgg--GCGCGAUGGCc -3'
miRNA:   3'- aCCaGCUGCa-CGaguaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 10868 0.66 0.928941
Target:  5'- aGGaCGACGUGUUCuuccccgagcccgGCgccaACGGCGGCg -3'
miRNA:   3'- aCCaGCUGCACGAGua-----------CG----UGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 64762 0.66 0.932079
Target:  5'- uUGGccUCGGCcaGCUCGcgGCGCGccACGACg -3'
miRNA:   3'- -ACC--AGCUGcaCGAGUa-CGUGC--UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 51795 0.66 0.932079
Target:  5'- cUGGcCGugGccaUGCUCGUGCuGCGGCu-- -3'
miRNA:   3'- -ACCaGCugC---ACGAGUACG-UGCUGcug -5'
23600 5' -54.5 NC_005261.1 + 122155 0.66 0.946444
Target:  5'- cGGcCGACGccaGCUCGaccgcgGcCACGAUGGCg -3'
miRNA:   3'- aCCaGCUGCa--CGAGUa-----C-GUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.