miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 91091 1.1 0.002987
Target:  5'- cUGGUCGACGUGCUCAUGCACGACGACg -3'
miRNA:   3'- -ACCAGCUGCACGAGUACGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 94379 0.77 0.407461
Target:  5'- cGGUCGAUG-GC-CA-GCGCGGCGGCg -3'
miRNA:   3'- aCCAGCUGCaCGaGUaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 73723 0.76 0.462002
Target:  5'- cGGUCGGCGUGCgcgCuUGCGCG-CGGg -3'
miRNA:   3'- aCCAGCUGCACGa--GuACGUGCuGCUg -5'
23600 5' -54.5 NC_005261.1 + 57830 0.75 0.481023
Target:  5'- gGGUCcACGUGCUCcgcggGCGCGgGCGGCa -3'
miRNA:   3'- aCCAGcUGCACGAGua---CGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 108284 0.73 0.580948
Target:  5'- cUGGUcCGGCGUugcGCUCGccUGCACGGCGuCc -3'
miRNA:   3'- -ACCA-GCUGCA---CGAGU--ACGUGCUGCuG- -5'
23600 5' -54.5 NC_005261.1 + 76737 0.73 0.591251
Target:  5'- cUGGcCGACGUGCUCGcGgACGugGcGCa -3'
miRNA:   3'- -ACCaGCUGCACGAGUaCgUGCugC-UG- -5'
23600 5' -54.5 NC_005261.1 + 63722 0.73 0.63166
Target:  5'- aGGUCcgugagcGGCGUGCgCAUGgcCGCGGCGGCg -3'
miRNA:   3'- aCCAG-------CUGCACGaGUAC--GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 115479 0.72 0.65345
Target:  5'- cGGUCG-CGgGCUCGgcCGCGGCGGCg -3'
miRNA:   3'- aCCAGCuGCaCGAGUacGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 70758 0.72 0.65345
Target:  5'- aGGUCcaGGCGgaaugagGC-CAUGCACGGCGAg -3'
miRNA:   3'- aCCAG--CUGCa------CGaGUACGUGCUGCUg -5'
23600 5' -54.5 NC_005261.1 + 124600 0.72 0.663804
Target:  5'- uUGGgCGGCGUGCggCAUaGCGCGuccaGCGGCa -3'
miRNA:   3'- -ACCaGCUGCACGa-GUA-CGUGC----UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 96851 0.72 0.663804
Target:  5'- gGGUCGACGggggGCUCGggggGCGCGgguaGCGuGCg -3'
miRNA:   3'- aCCAGCUGCa---CGAGUa---CGUGC----UGC-UG- -5'
23600 5' -54.5 NC_005261.1 + 71514 0.72 0.674132
Target:  5'- -aGUCGGCGgGCUCGUcCGCGuACGACg -3'
miRNA:   3'- acCAGCUGCaCGAGUAcGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 79352 0.71 0.725056
Target:  5'- cGGUCGAUGUcguagaaccggaGCUCGUGCAgcUGguuGCGGCg -3'
miRNA:   3'- aCCAGCUGCA------------CGAGUACGU--GC---UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 105863 0.71 0.735032
Target:  5'- cGGUCGGCGaUGCgguugggCAggUGCACGAuCGAg -3'
miRNA:   3'- aCCAGCUGC-ACGa------GU--ACGUGCU-GCUg -5'
23600 5' -54.5 NC_005261.1 + 135080 0.71 0.744916
Target:  5'- cGG-CGGCGgGCUCGcgGCcCGGCGGCg -3'
miRNA:   3'- aCCaGCUGCaCGAGUa-CGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 65808 0.7 0.78334
Target:  5'- gGGUCGGgGUGC-CcgG-GCGGCGGCg -3'
miRNA:   3'- aCCAGCUgCACGaGuaCgUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 118561 0.7 0.79262
Target:  5'- aGGaCGcCGUGCccgCGcGCGCGGCGGCg -3'
miRNA:   3'- aCCaGCuGCACGa--GUaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 76663 0.69 0.801751
Target:  5'- aGGUCGGCGccgUGCUgGcccucGC-CGACGACg -3'
miRNA:   3'- aCCAGCUGC---ACGAgUa----CGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 116245 0.69 0.810724
Target:  5'- aGGUCGACG-GCgauuggggucaUCAcGCcCGGCGGCg -3'
miRNA:   3'- aCCAGCUGCaCG-----------AGUaCGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 121057 0.69 0.819531
Target:  5'- cGGUUGugGcGCgcggUGUGCGCGGCGcCg -3'
miRNA:   3'- aCCAGCugCaCGa---GUACGUGCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.