miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 107784 0.66 0.926259
Target:  5'- cGGUCGAaccaCGUuaggaggGcCUCGcGCGCGGCGGCc -3'
miRNA:   3'- aCCAGCU----GCA-------C-GAGUaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 90793 0.66 0.921276
Target:  5'- cGGcCGGCGcGCgcuaccgCGUGCgcuggucuACGGCGACa -3'
miRNA:   3'- aCCaGCUGCaCGa------GUACG--------UGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 19274 0.66 0.921276
Target:  5'- gGGUaCGccaGCGU-CUCGUaCGCGACGACg -3'
miRNA:   3'- aCCA-GC---UGCAcGAGUAcGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 17148 0.67 0.917844
Target:  5'- gGGUCGACGUagaccgucacccgcgGCgcgggCGUGggcagcccugcCGCGGCGGCg -3'
miRNA:   3'- aCCAGCUGCA---------------CGa----GUAC-----------GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 65585 0.67 0.915507
Target:  5'- cUGGUCcGCGaGCUCcUGCucgccgggguCGGCGACg -3'
miRNA:   3'- -ACCAGcUGCaCGAGuACGu---------GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 132106 0.67 0.915507
Target:  5'- cGGccgCGACGcGCUCGUggagcgggacGCGCGGCuGACc -3'
miRNA:   3'- aCCa--GCUGCaCGAGUA----------CGUGCUG-CUG- -5'
23600 5' -54.5 NC_005261.1 + 52477 0.67 0.915507
Target:  5'- cGGUugCGGCG-GCaUCGgcUGCACGACGcCg -3'
miRNA:   3'- aCCA--GCUGCaCG-AGU--ACGUGCUGCuG- -5'
23600 5' -54.5 NC_005261.1 + 64913 0.67 0.911927
Target:  5'- gUGGUucagcgCGGCGUGCUCcUGCucgccgcccaggggcGCGuGCGGCa -3'
miRNA:   3'- -ACCA------GCUGCACGAGuACG---------------UGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 24369 0.67 0.909492
Target:  5'- -cGUCGGCgGUGCUCccgguggGCucguCGGCGGCg -3'
miRNA:   3'- acCAGCUG-CACGAGua-----CGu---GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 5242 0.67 0.909492
Target:  5'- aGGUCGAgCGUggccgGCUCGUGCcCGcCGGg -3'
miRNA:   3'- aCCAGCU-GCA-----CGAGUACGuGCuGCUg -5'
23600 5' -54.5 NC_005261.1 + 79423 0.67 0.90764
Target:  5'- cGuGUCGGCGaGCUCG-GCGCGcguguacaccuccaGCGGCa -3'
miRNA:   3'- aC-CAGCUGCaCGAGUaCGUGC--------------UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 138219 0.67 0.903235
Target:  5'- cGGaCGGCG-GCUCGgccgccGCGCGGUGACa -3'
miRNA:   3'- aCCaGCUGCaCGAGUa-----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 548 0.67 0.903235
Target:  5'- cGGaCGGCG-GCUCGgccgccGCGCGGUGACa -3'
miRNA:   3'- aCCaGCUGCaCGAGUa-----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 112447 0.67 0.900665
Target:  5'- cUGGcacugCGACGUGCgggccgugcuaaaCAUGCGCGgcaugcucgcccGCGACg -3'
miRNA:   3'- -ACCa----GCUGCACGa------------GUACGUGC------------UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 128495 0.67 0.896738
Target:  5'- -cGUCGugGaGCUCGa-CGCGGCGGCg -3'
miRNA:   3'- acCAGCugCaCGAGUacGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 54984 0.67 0.894742
Target:  5'- aGGUcuuuacggccacgcCGGCG-GcCUCGUGCACaACGACg -3'
miRNA:   3'- aCCA--------------GCUGCaC-GAGUACGUGcUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 75218 0.68 0.880183
Target:  5'- gUGG-CGGCGcUGCaguccagcgggcgCAUGUACGugGGCa -3'
miRNA:   3'- -ACCaGCUGC-ACGa------------GUACGUGCugCUG- -5'
23600 5' -54.5 NC_005261.1 + 13352 0.68 0.875838
Target:  5'- cGGUCGGCG-Gag---GCugGGCGGCa -3'
miRNA:   3'- aCCAGCUGCaCgaguaCGugCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 85916 0.68 0.875838
Target:  5'- gUGGccugcUCGAcCGUGCUC-UGgAUGGCGGCc -3'
miRNA:   3'- -ACC-----AGCU-GCACGAGuACgUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 59766 0.68 0.875838
Target:  5'- aGGccUCcAUGUGCUCGgccGCAgCGACGGCg -3'
miRNA:   3'- aCC--AGcUGCACGAGUa--CGU-GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.