miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 548 0.67 0.903235
Target:  5'- cGGaCGGCG-GCUCGgccgccGCGCGGUGACa -3'
miRNA:   3'- aCCaGCUGCaCGAGUa-----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 1290 0.68 0.860777
Target:  5'- aGGcCGGCGggGCUCccGUcgccgGCGGCGGCa -3'
miRNA:   3'- aCCaGCUGCa-CGAGuaCG-----UGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 5242 0.67 0.909492
Target:  5'- aGGUCGAgCGUggccgGCUCGUGCcCGcCGGg -3'
miRNA:   3'- aCCAGCU-GCA-----CGAGUACGuGCuGCUg -5'
23600 5' -54.5 NC_005261.1 + 10868 0.66 0.928941
Target:  5'- aGGaCGACGUGUUCuuccccgagcccgGCgccaACGGCGGCg -3'
miRNA:   3'- aCCaGCUGCACGAGua-----------CG----UGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 13095 0.69 0.828162
Target:  5'- cGGgCGGCGggcucgGCUCGgggGCGuCGGCGGCc -3'
miRNA:   3'- aCCaGCUGCa-----CGAGUa--CGU-GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 13352 0.68 0.875838
Target:  5'- cGGUCGGCG-Gag---GCugGGCGGCa -3'
miRNA:   3'- aCCAGCUGCaCgaguaCGugCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 17148 0.67 0.917844
Target:  5'- gGGUCGACGUagaccgucacccgcgGCgcgggCGUGggcagcccugcCGCGGCGGCg -3'
miRNA:   3'- aCCAGCUGCA---------------CGa----GUAC-----------GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 19274 0.66 0.921276
Target:  5'- gGGUaCGccaGCGU-CUCGUaCGCGACGACg -3'
miRNA:   3'- aCCA-GC---UGCAcGAGUAcGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 19820 0.68 0.852925
Target:  5'- cGGUCGAUGcaaaaGUUCAgcGCGCGcGCGGCg -3'
miRNA:   3'- aCCAGCUGCa----CGAGUa-CGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 24369 0.67 0.909492
Target:  5'- -cGUCGGCgGUGCUCccgguggGCucguCGGCGGCg -3'
miRNA:   3'- acCAGCUG-CACGAGua-----CGu---GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 29334 0.66 0.937111
Target:  5'- cGGcCG-CGUGCgcuUCGgcgGCGCGgGCGACa -3'
miRNA:   3'- aCCaGCuGCACG---AGUa--CGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 30252 0.68 0.868416
Target:  5'- cGGuacUCGACGcGCg---GCGCGGCGGCc -3'
miRNA:   3'- aCC---AGCUGCaCGaguaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 31656 0.66 0.926259
Target:  5'- cGGUCGaguaccucugccuGCG-GCUgGccgcgGCGCGGCGGCg -3'
miRNA:   3'- aCCAGC-------------UGCaCGAgUa----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 34021 0.66 0.937111
Target:  5'- --cUCGACGUGaUCAccgGCGCGGCGcGCg -3'
miRNA:   3'- accAGCUGCACgAGUa--CGUGCUGC-UG- -5'
23600 5' -54.5 NC_005261.1 + 42465 0.68 0.857661
Target:  5'- aGG-CGGCGgcuaGCUUuagguagacguuuUGCGCGGCGACg -3'
miRNA:   3'- aCCaGCUGCa---CGAGu------------ACGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 43656 0.66 0.941899
Target:  5'- cGGU-GACGUGCUCuucgagucgcccAUGCagcggcuccACGGCGAg -3'
miRNA:   3'- aCCAgCUGCACGAG------------UACG---------UGCUGCUg -5'
23600 5' -54.5 NC_005261.1 + 50989 0.69 0.828162
Target:  5'- cGGcCGACG-GCg---GCGCGugGGCg -3'
miRNA:   3'- aCCaGCUGCaCGaguaCGUGCugCUG- -5'
23600 5' -54.5 NC_005261.1 + 51795 0.66 0.932079
Target:  5'- cUGGcCGugGccaUGCUCGUGCuGCGGCu-- -3'
miRNA:   3'- -ACCaGCugC---ACGAGUACG-UGCUGcug -5'
23600 5' -54.5 NC_005261.1 + 52477 0.67 0.915507
Target:  5'- cGGUugCGGCG-GCaUCGgcUGCACGACGcCg -3'
miRNA:   3'- aCCA--GCUGCaCG-AGU--ACGUGCUGCuG- -5'
23600 5' -54.5 NC_005261.1 + 54984 0.67 0.894742
Target:  5'- aGGUcuuuacggccacgcCGGCG-GcCUCGUGCACaACGACg -3'
miRNA:   3'- aCCA--------------GCUGCaC-GAGUACGUGcUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.