Results 41 - 60 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 79423 | 0.67 | 0.90764 |
Target: 5'- cGuGUCGGCGaGCUCG-GCGCGcguguacaccuccaGCGGCa -3' miRNA: 3'- aC-CAGCUGCaCGAGUaCGUGC--------------UGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 85916 | 0.68 | 0.875838 |
Target: 5'- gUGGccugcUCGAcCGUGCUC-UGgAUGGCGGCc -3' miRNA: 3'- -ACC-----AGCU-GCACGAGuACgUGCUGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 90793 | 0.66 | 0.921276 |
Target: 5'- cGGcCGGCGcGCgcuaccgCGUGCgcuggucuACGGCGACa -3' miRNA: 3'- aCCaGCUGCaCGa------GUACG--------UGCUGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 91091 | 1.1 | 0.002987 |
Target: 5'- cUGGUCGACGUGCUCAUGCACGACGACg -3' miRNA: 3'- -ACCAGCUGCACGAGUACGUGCUGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 93561 | 0.69 | 0.83661 |
Target: 5'- cGGUCGACG-GCg---GUGCGGCGGg -3' miRNA: 3'- aCCAGCUGCaCGaguaCGUGCUGCUg -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 94379 | 0.77 | 0.407461 |
Target: 5'- cGGUCGAUG-GC-CA-GCGCGGCGGCg -3' miRNA: 3'- aCCAGCUGCaCGaGUaCGUGCUGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 96130 | 0.68 | 0.868416 |
Target: 5'- aUGGUCGACcUGCggCGgcgGCACGAgaaGGCc -3' miRNA: 3'- -ACCAGCUGcACGa-GUa--CGUGCUg--CUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 96851 | 0.72 | 0.663804 |
Target: 5'- gGGUCGACGggggGCUCGggggGCGCGgguaGCGuGCg -3' miRNA: 3'- aCCAGCUGCa---CGAGUa---CGUGC----UGC-UG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 97749 | 0.66 | 0.946444 |
Target: 5'- gGGgcggGGCGgGCUCGgcgGCGCGGcCGGCa -3' miRNA: 3'- aCCag--CUGCaCGAGUa--CGUGCU-GCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 104200 | 0.68 | 0.860777 |
Target: 5'- gGGaCGGCGUccaggcGCUCGcGCGCGGCGcGCa -3' miRNA: 3'- aCCaGCUGCA------CGAGUaCGUGCUGC-UG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 105863 | 0.71 | 0.735032 |
Target: 5'- cGGUCGGCGaUGCgguugggCAggUGCACGAuCGAg -3' miRNA: 3'- aCCAGCUGC-ACGa------GU--ACGUGCU-GCUg -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 107784 | 0.66 | 0.926259 |
Target: 5'- cGGUCGAaccaCGUuaggaggGcCUCGcGCGCGGCGGCc -3' miRNA: 3'- aCCAGCU----GCA-------C-GAGUaCGUGCUGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 108284 | 0.73 | 0.580948 |
Target: 5'- cUGGUcCGGCGUugcGCUCGccUGCACGGCGuCc -3' miRNA: 3'- -ACCA-GCUGCA---CGAGU--ACGUGCUGCuG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 109807 | 0.66 | 0.932079 |
Target: 5'- cGGcCGGCGccGCUUccGcCGCGGCGGCc -3' miRNA: 3'- aCCaGCUGCa-CGAGuaC-GUGCUGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 111727 | 0.69 | 0.83661 |
Target: 5'- gGGUCGACGaGCgCGUGUACG-UGAa -3' miRNA: 3'- aCCAGCUGCaCGaGUACGUGCuGCUg -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 112447 | 0.67 | 0.900665 |
Target: 5'- cUGGcacugCGACGUGCgggccgugcuaaaCAUGCGCGgcaugcucgcccGCGACg -3' miRNA: 3'- -ACCa----GCUGCACGa------------GUACGUGC------------UGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 112694 | 0.66 | 0.946444 |
Target: 5'- gGcGUCGAggcCGUGCcCGUGCAgGACcuGGCg -3' miRNA: 3'- aC-CAGCU---GCACGaGUACGUgCUG--CUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 113252 | 0.66 | 0.937111 |
Target: 5'- aGuUCGcGCGcggGCUCAUGCcguuCGACGGCu -3' miRNA: 3'- aCcAGC-UGCa--CGAGUACGu---GCUGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 113895 | 0.66 | 0.926801 |
Target: 5'- cGG-CGACGcgGCgg--GCGCGAUGGCc -3' miRNA: 3'- aCCaGCUGCa-CGaguaCGUGCUGCUG- -5' |
|||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 115479 | 0.72 | 0.65345 |
Target: 5'- cGGUCG-CGgGCUCGgcCGCGGCGGCg -3' miRNA: 3'- aCCAGCuGCaCGAGUacGUGCUGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home