miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 116245 0.69 0.810724
Target:  5'- aGGUCGACG-GCgauuggggucaUCAcGCcCGGCGGCg -3'
miRNA:   3'- aCCAGCUGCaCG-----------AGUaCGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 118561 0.7 0.79262
Target:  5'- aGGaCGcCGUGCccgCGcGCGCGGCGGCg -3'
miRNA:   3'- aCCaGCuGCACGa--GUaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 121057 0.69 0.819531
Target:  5'- cGGUUGugGcGCgcggUGUGCGCGGCGcCg -3'
miRNA:   3'- aCCAGCugCaCGa---GUACGUGCUGCuG- -5'
23600 5' -54.5 NC_005261.1 + 122155 0.66 0.946444
Target:  5'- cGGcCGACGccaGCUCGaccgcgGcCACGAUGGCg -3'
miRNA:   3'- aCCaGCUGCa--CGAGUa-----C-GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 124600 0.72 0.663804
Target:  5'- uUGGgCGGCGUGCggCAUaGCGCGuccaGCGGCa -3'
miRNA:   3'- -ACCaGCUGCACGa-GUA-CGUGC----UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 128495 0.67 0.896738
Target:  5'- -cGUCGugGaGCUCGa-CGCGGCGGCg -3'
miRNA:   3'- acCAGCugCaCGAGUacGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 130474 0.68 0.860001
Target:  5'- cGGcucgCGGCGUGcCUCGgcgGCGagggcccCGACGACg -3'
miRNA:   3'- aCCa---GCUGCAC-GAGUa--CGU-------GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 132106 0.67 0.915507
Target:  5'- cGGccgCGACGcGCUCGUggagcgggacGCGCGGCuGACc -3'
miRNA:   3'- aCCa--GCUGCaCGAGUA----------CGUGCUG-CUG- -5'
23600 5' -54.5 NC_005261.1 + 135080 0.71 0.744916
Target:  5'- cGG-CGGCGgGCUCGcgGCcCGGCGGCg -3'
miRNA:   3'- aCCaGCUGCaCGAGUa-CGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 136999 0.66 0.937111
Target:  5'- aGGUCGAuCGUGCggcCGgagaGCGCGgccagcagaACGGCg -3'
miRNA:   3'- aCCAGCU-GCACGa--GUa---CGUGC---------UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 138219 0.67 0.903235
Target:  5'- cGGaCGGCG-GCUCGgccgccGCGCGGUGACa -3'
miRNA:   3'- aCCaGCUGCaCGAGUa-----CGUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.