miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 105863 0.71 0.735032
Target:  5'- cGGUCGGCGaUGCgguugggCAggUGCACGAuCGAg -3'
miRNA:   3'- aCCAGCUGC-ACGa------GU--ACGUGCU-GCUg -5'
23600 5' -54.5 NC_005261.1 + 104200 0.68 0.860777
Target:  5'- gGGaCGGCGUccaggcGCUCGcGCGCGGCGcGCa -3'
miRNA:   3'- aCCaGCUGCA------CGAGUaCGUGCUGC-UG- -5'
23600 5' -54.5 NC_005261.1 + 97749 0.66 0.946444
Target:  5'- gGGgcggGGCGgGCUCGgcgGCGCGGcCGGCa -3'
miRNA:   3'- aCCag--CUGCaCGAGUa--CGUGCU-GCUG- -5'
23600 5' -54.5 NC_005261.1 + 96851 0.72 0.663804
Target:  5'- gGGUCGACGggggGCUCGggggGCGCGgguaGCGuGCg -3'
miRNA:   3'- aCCAGCUGCa---CGAGUa---CGUGC----UGC-UG- -5'
23600 5' -54.5 NC_005261.1 + 96130 0.68 0.868416
Target:  5'- aUGGUCGACcUGCggCGgcgGCACGAgaaGGCc -3'
miRNA:   3'- -ACCAGCUGcACGa-GUa--CGUGCUg--CUG- -5'
23600 5' -54.5 NC_005261.1 + 94379 0.77 0.407461
Target:  5'- cGGUCGAUG-GC-CA-GCGCGGCGGCg -3'
miRNA:   3'- aCCAGCUGCaCGaGUaCGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 93561 0.69 0.83661
Target:  5'- cGGUCGACG-GCg---GUGCGGCGGg -3'
miRNA:   3'- aCCAGCUGCaCGaguaCGUGCUGCUg -5'
23600 5' -54.5 NC_005261.1 + 91091 1.1 0.002987
Target:  5'- cUGGUCGACGUGCUCAUGCACGACGACg -3'
miRNA:   3'- -ACCAGCUGCACGAGUACGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 90793 0.66 0.921276
Target:  5'- cGGcCGGCGcGCgcuaccgCGUGCgcuggucuACGGCGACa -3'
miRNA:   3'- aCCaGCUGCaCGa------GUACG--------UGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 85916 0.68 0.875838
Target:  5'- gUGGccugcUCGAcCGUGCUC-UGgAUGGCGGCc -3'
miRNA:   3'- -ACC-----AGCU-GCACGAGuACgUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 79423 0.67 0.90764
Target:  5'- cGuGUCGGCGaGCUCG-GCGCGcguguacaccuccaGCGGCa -3'
miRNA:   3'- aC-CAGCUGCaCGAGUaCGUGC--------------UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 79352 0.71 0.725056
Target:  5'- cGGUCGAUGUcguagaaccggaGCUCGUGCAgcUGguuGCGGCg -3'
miRNA:   3'- aCCAGCUGCA------------CGAGUACGU--GC---UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 77404 0.66 0.926801
Target:  5'- cGG-CGACuauGUGUaCGUGC-CGACGGCc -3'
miRNA:   3'- aCCaGCUG---CACGaGUACGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 76737 0.73 0.591251
Target:  5'- cUGGcCGACGUGCUCGcGgACGugGcGCa -3'
miRNA:   3'- -ACCaGCUGCACGAGUaCgUGCugC-UG- -5'
23600 5' -54.5 NC_005261.1 + 76663 0.69 0.801751
Target:  5'- aGGUCGGCGccgUGCUgGcccucGC-CGACGACg -3'
miRNA:   3'- aCCAGCUGC---ACGAgUa----CGuGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 75218 0.68 0.880183
Target:  5'- gUGG-CGGCGcUGCaguccagcgggcgCAUGUACGugGGCa -3'
miRNA:   3'- -ACCaGCUGC-ACGa------------GUACGUGCugCUG- -5'
23600 5' -54.5 NC_005261.1 + 73723 0.76 0.462002
Target:  5'- cGGUCGGCGUGCgcgCuUGCGCG-CGGg -3'
miRNA:   3'- aCCAGCUGCACGa--GuACGUGCuGCUg -5'
23600 5' -54.5 NC_005261.1 + 71514 0.72 0.674132
Target:  5'- -aGUCGGCGgGCUCGUcCGCGuACGACg -3'
miRNA:   3'- acCAGCUGCaCGAGUAcGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 70758 0.72 0.65345
Target:  5'- aGGUCcaGGCGgaaugagGC-CAUGCACGGCGAg -3'
miRNA:   3'- aCCAG--CUGCa------CGaGUACGUGCUGCUg -5'
23600 5' -54.5 NC_005261.1 + 65808 0.7 0.78334
Target:  5'- gGGUCGGgGUGC-CcgG-GCGGCGGCg -3'
miRNA:   3'- aCCAGCUgCACGaGuaCgUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.