miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23600 5' -54.5 NC_005261.1 + 65585 0.67 0.915507
Target:  5'- cUGGUCcGCGaGCUCcUGCucgccgggguCGGCGACg -3'
miRNA:   3'- -ACCAGcUGCaCGAGuACGu---------GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 64913 0.67 0.911927
Target:  5'- gUGGUucagcgCGGCGUGCUCcUGCucgccgcccaggggcGCGuGCGGCa -3'
miRNA:   3'- -ACCA------GCUGCACGAGuACG---------------UGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 64762 0.66 0.932079
Target:  5'- uUGGccUCGGCcaGCUCGcgGCGCGccACGACg -3'
miRNA:   3'- -ACC--AGCUGcaCGAGUa-CGUGC--UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 63782 0.66 0.932079
Target:  5'- aGGUCcACGUGCgc--GCGCGGCuGCg -3'
miRNA:   3'- aCCAGcUGCACGaguaCGUGCUGcUG- -5'
23600 5' -54.5 NC_005261.1 + 63722 0.73 0.63166
Target:  5'- aGGUCcgugagcGGCGUGCgCAUGgcCGCGGCGGCg -3'
miRNA:   3'- aCCAG-------CUGCACGaGUAC--GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 62498 0.66 0.941431
Target:  5'- aGGUCGAacgggccCGUGUUC-UGCAgGAaGGCg -3'
miRNA:   3'- aCCAGCU-------GCACGAGuACGUgCUgCUG- -5'
23600 5' -54.5 NC_005261.1 + 62295 0.66 0.937111
Target:  5'- -cGUCGGCGccGCgCGggcGCGCGGCGGCc -3'
miRNA:   3'- acCAGCUGCa-CGaGUa--CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 59920 0.66 0.932079
Target:  5'- aGGUCGACGaGCUC--GC-CGuCGGCc -3'
miRNA:   3'- aCCAGCUGCaCGAGuaCGuGCuGCUG- -5'
23600 5' -54.5 NC_005261.1 + 59766 0.68 0.875838
Target:  5'- aGGccUCcAUGUGCUCGgccGCAgCGACGGCg -3'
miRNA:   3'- aCC--AGcUGCACGAGUa--CGU-GCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 59182 0.66 0.926801
Target:  5'- -cGcCGAC-UGCUCGUagGaCACGACGACg -3'
miRNA:   3'- acCaGCUGcACGAGUA--C-GUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 57830 0.75 0.481023
Target:  5'- gGGUCcACGUGCUCcgcggGCGCGgGCGGCa -3'
miRNA:   3'- aCCAGcUGCACGAGua---CGUGC-UGCUG- -5'
23600 5' -54.5 NC_005261.1 + 54984 0.67 0.894742
Target:  5'- aGGUcuuuacggccacgcCGGCG-GcCUCGUGCACaACGACg -3'
miRNA:   3'- aCCA--------------GCUGCaC-GAGUACGUGcUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 52477 0.67 0.915507
Target:  5'- cGGUugCGGCG-GCaUCGgcUGCACGACGcCg -3'
miRNA:   3'- aCCA--GCUGCaCG-AGU--ACGUGCUGCuG- -5'
23600 5' -54.5 NC_005261.1 + 51795 0.66 0.932079
Target:  5'- cUGGcCGugGccaUGCUCGUGCuGCGGCu-- -3'
miRNA:   3'- -ACCaGCugC---ACGAGUACG-UGCUGcug -5'
23600 5' -54.5 NC_005261.1 + 50989 0.69 0.828162
Target:  5'- cGGcCGACG-GCg---GCGCGugGGCg -3'
miRNA:   3'- aCCaGCUGCaCGaguaCGUGCugCUG- -5'
23600 5' -54.5 NC_005261.1 + 43656 0.66 0.941899
Target:  5'- cGGU-GACGUGCUCuucgagucgcccAUGCagcggcuccACGGCGAg -3'
miRNA:   3'- aCCAgCUGCACGAG------------UACG---------UGCUGCUg -5'
23600 5' -54.5 NC_005261.1 + 42465 0.68 0.857661
Target:  5'- aGG-CGGCGgcuaGCUUuagguagacguuuUGCGCGGCGACg -3'
miRNA:   3'- aCCaGCUGCa---CGAGu------------ACGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 34021 0.66 0.937111
Target:  5'- --cUCGACGUGaUCAccgGCGCGGCGcGCg -3'
miRNA:   3'- accAGCUGCACgAGUa--CGUGCUGC-UG- -5'
23600 5' -54.5 NC_005261.1 + 31656 0.66 0.926259
Target:  5'- cGGUCGaguaccucugccuGCG-GCUgGccgcgGCGCGGCGGCg -3'
miRNA:   3'- aCCAGC-------------UGCaCGAgUa----CGUGCUGCUG- -5'
23600 5' -54.5 NC_005261.1 + 30252 0.68 0.868416
Target:  5'- cGGuacUCGACGcGCg---GCGCGGCGGCc -3'
miRNA:   3'- aCC---AGCUGCaCGaguaCGUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.