Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 29334 | 0.66 | 0.937111 |
Target: 5'- cGGcCG-CGUGCgcuUCGgcgGCGCGgGCGACa -3' miRNA: 3'- aCCaGCuGCACG---AGUa--CGUGC-UGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 24369 | 0.67 | 0.909492 |
Target: 5'- -cGUCGGCgGUGCUCccgguggGCucguCGGCGGCg -3' miRNA: 3'- acCAGCUG-CACGAGua-----CGu---GCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 19820 | 0.68 | 0.852925 |
Target: 5'- cGGUCGAUGcaaaaGUUCAgcGCGCGcGCGGCg -3' miRNA: 3'- aCCAGCUGCa----CGAGUa-CGUGC-UGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 19274 | 0.66 | 0.921276 |
Target: 5'- gGGUaCGccaGCGU-CUCGUaCGCGACGACg -3' miRNA: 3'- aCCA-GC---UGCAcGAGUAcGUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 17148 | 0.67 | 0.917844 |
Target: 5'- gGGUCGACGUagaccgucacccgcgGCgcgggCGUGggcagcccugcCGCGGCGGCg -3' miRNA: 3'- aCCAGCUGCA---------------CGa----GUAC-----------GUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 13352 | 0.68 | 0.875838 |
Target: 5'- cGGUCGGCG-Gag---GCugGGCGGCa -3' miRNA: 3'- aCCAGCUGCaCgaguaCGugCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 13095 | 0.69 | 0.828162 |
Target: 5'- cGGgCGGCGggcucgGCUCGgggGCGuCGGCGGCc -3' miRNA: 3'- aCCaGCUGCa-----CGAGUa--CGU-GCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 10868 | 0.66 | 0.928941 |
Target: 5'- aGGaCGACGUGUUCuuccccgagcccgGCgccaACGGCGGCg -3' miRNA: 3'- aCCaGCUGCACGAGua-----------CG----UGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 5242 | 0.67 | 0.909492 |
Target: 5'- aGGUCGAgCGUggccgGCUCGUGCcCGcCGGg -3' miRNA: 3'- aCCAGCU-GCA-----CGAGUACGuGCuGCUg -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 1290 | 0.68 | 0.860777 |
Target: 5'- aGGcCGGCGggGCUCccGUcgccgGCGGCGGCa -3' miRNA: 3'- aCCaGCUGCa-CGAGuaCG-----UGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 548 | 0.67 | 0.903235 |
Target: 5'- cGGaCGGCG-GCUCGgccgccGCGCGGUGACa -3' miRNA: 3'- aCCaGCUGCaCGAGUa-----CGUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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