Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23600 | 5' | -54.5 | NC_005261.1 | + | 24369 | 0.67 | 0.909492 |
Target: 5'- -cGUCGGCgGUGCUCccgguggGCucguCGGCGGCg -3' miRNA: 3'- acCAGCUG-CACGAGua-----CGu---GCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 64913 | 0.67 | 0.911927 |
Target: 5'- gUGGUucagcgCGGCGUGCUCcUGCucgccgcccaggggcGCGuGCGGCa -3' miRNA: 3'- -ACCA------GCUGCACGAGuACG---------------UGC-UGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 65585 | 0.67 | 0.915507 |
Target: 5'- cUGGUCcGCGaGCUCcUGCucgccgggguCGGCGACg -3' miRNA: 3'- -ACCAGcUGCaCGAGuACGu---------GCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 132106 | 0.67 | 0.915507 |
Target: 5'- cGGccgCGACGcGCUCGUggagcgggacGCGCGGCuGACc -3' miRNA: 3'- aCCa--GCUGCaCGAGUA----------CGUGCUG-CUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 52477 | 0.67 | 0.915507 |
Target: 5'- cGGUugCGGCG-GCaUCGgcUGCACGACGcCg -3' miRNA: 3'- aCCA--GCUGCaCG-AGU--ACGUGCUGCuG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 17148 | 0.67 | 0.917844 |
Target: 5'- gGGUCGACGUagaccgucacccgcgGCgcgggCGUGggcagcccugcCGCGGCGGCg -3' miRNA: 3'- aCCAGCUGCA---------------CGa----GUAC-----------GUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 19274 | 0.66 | 0.921276 |
Target: 5'- gGGUaCGccaGCGU-CUCGUaCGCGACGACg -3' miRNA: 3'- aCCA-GC---UGCAcGAGUAcGUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 90793 | 0.66 | 0.921276 |
Target: 5'- cGGcCGGCGcGCgcuaccgCGUGCgcuggucuACGGCGACa -3' miRNA: 3'- aCCaGCUGCaCGa------GUACG--------UGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 31656 | 0.66 | 0.926259 |
Target: 5'- cGGUCGaguaccucugccuGCG-GCUgGccgcgGCGCGGCGGCg -3' miRNA: 3'- aCCAGC-------------UGCaCGAgUa----CGUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 107784 | 0.66 | 0.926259 |
Target: 5'- cGGUCGAaccaCGUuaggaggGcCUCGcGCGCGGCGGCc -3' miRNA: 3'- aCCAGCU----GCA-------C-GAGUaCGUGCUGCUG- -5' |
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23600 | 5' | -54.5 | NC_005261.1 | + | 122155 | 0.66 | 0.946444 |
Target: 5'- cGGcCGACGccaGCUCGaccgcgGcCACGAUGGCg -3' miRNA: 3'- aCCaGCUGCa--CGAGUa-----C-GUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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