miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 131196 0.66 0.603368
Target:  5'- ----cGCGGCGCggucgCCGCCggcgCGCCCg -3'
miRNA:   3'- agagcCGCCGCGagaa-GGCGG----GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 45616 0.66 0.603368
Target:  5'- --cCGGCGGCGCggcgCggCgcggcggGCCCGCgCCg -3'
miRNA:   3'- agaGCCGCCGCGa---GaaGg------CGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 5579 0.66 0.603368
Target:  5'- --aUGGgGGCGC-CgagggCGCCCGCCUc -3'
miRNA:   3'- agaGCCgCCGCGaGaag--GCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 135077 0.66 0.603368
Target:  5'- uUC-CGGCGGCGggCUcgCgGCCCGgCg -3'
miRNA:   3'- -AGaGCCGCCGCgaGAa-GgCGGGCgGg -5'
23601 3' -63.3 NC_005261.1 + 102002 0.66 0.603368
Target:  5'- -gUCGuaGUGGCGCagCUcgCCG-CCGCCCg -3'
miRNA:   3'- agAGC--CGCCGCGa-GAa-GGCgGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 52482 0.66 0.603368
Target:  5'- --gCGGCGGCaucgGCUgcaCgacgCCGCCUGUCCc -3'
miRNA:   3'- agaGCCGCCG----CGA---Gaa--GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 13734 0.66 0.603368
Target:  5'- ---gGGUGG-GCUUggCCGCCCcucGCCCc -3'
miRNA:   3'- agagCCGCCgCGAGaaGGCGGG---CGGG- -5'
23601 3' -63.3 NC_005261.1 + 9721 0.66 0.602396
Target:  5'- --gCaGCaGCGCUCcgCCgcgacuaGCCCGCCCg -3'
miRNA:   3'- agaGcCGcCGCGAGaaGG-------CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 20735 0.66 0.602396
Target:  5'- gCUCGGCcguuucacgugugGGUGUUUggcgCCGCCgacuuguacgCGCCCg -3'
miRNA:   3'- aGAGCCG-------------CCGCGAGaa--GGCGG----------GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 22593 0.66 0.599482
Target:  5'- ---aGGCGGCGCacgcugccggcgcaUCUcgucccgUCgCGuCCCGCCCc -3'
miRNA:   3'- agagCCGCCGCG--------------AGA-------AG-GC-GGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 3168 0.66 0.59366
Target:  5'- --gCGGCGGCGgcCUCUUCC--UCGUCCu -3'
miRNA:   3'- agaGCCGCCGC--GAGAAGGcgGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 32230 0.66 0.59366
Target:  5'- --gCGGCGGUgGC-CUUCUGCgCGgCCg -3'
miRNA:   3'- agaGCCGCCG-CGaGAAGGCGgGCgGG- -5'
23601 3' -63.3 NC_005261.1 + 64033 0.66 0.59366
Target:  5'- uUCUCGuCGGCGCggcUCUGCgCCGCg- -3'
miRNA:   3'- -AGAGCcGCCGCGagaAGGCG-GGCGgg -5'
23601 3' -63.3 NC_005261.1 + 101830 0.66 0.59366
Target:  5'- --gCGcGCGGCugauCUCcgCCGCgCGCCCg -3'
miRNA:   3'- agaGC-CGCCGc---GAGaaGGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 114555 0.66 0.59366
Target:  5'- cCUCGGCGGgGagcggCCGC-CGCCg -3'
miRNA:   3'- aGAGCCGCCgCgagaaGGCGgGCGGg -5'
23601 3' -63.3 NC_005261.1 + 12938 0.66 0.59366
Target:  5'- -gUCGuaGGUGCgCUUCUgGCCCGCgCg -3'
miRNA:   3'- agAGCcgCCGCGaGAAGG-CGGGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 13066 0.66 0.59366
Target:  5'- --cCuGCcgGGCGCg--UCCGCCgGCCCg -3'
miRNA:   3'- agaGcCG--CCGCGagaAGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 32508 0.66 0.59366
Target:  5'- -aUCGGCGGgGgg--UCCGCgCCGCgCCc -3'
miRNA:   3'- agAGCCGCCgCgagaAGGCG-GGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 40850 0.66 0.59366
Target:  5'- cCUCGaagGGCGCg--UCCGCgaaggCCGCCCc -3'
miRNA:   3'- aGAGCcg-CCGCGagaAGGCG-----GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 110822 0.66 0.583977
Target:  5'- --gCGGaCGGgGCcgcggacgaguuUCcgCUGCCCGCCCu -3'
miRNA:   3'- agaGCC-GCCgCG------------AGaaGGCGGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.