miRNA display CGI


Results 61 - 80 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 57980 0.66 0.583977
Target:  5'- ---aGGCGcGCGCgg--CCGCgCCGCCa -3'
miRNA:   3'- agagCCGC-CGCGagaaGGCG-GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 3168 0.66 0.59366
Target:  5'- --gCGGCGGCGgcCUCUUCC--UCGUCCu -3'
miRNA:   3'- agaGCCGCCGC--GAGAAGGcgGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 132584 0.66 0.583977
Target:  5'- -gUCGGC-GCGCccgCggaCGCCCgGCCCg -3'
miRNA:   3'- agAGCCGcCGCGa--GaagGCGGG-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 110822 0.66 0.583977
Target:  5'- --gCGGaCGGgGCcgcggacgaguuUCcgCUGCCCGCCCu -3'
miRNA:   3'- agaGCC-GCCgCG------------AGaaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 45898 0.66 0.583977
Target:  5'- aCUCuGuUGGCGCUCgccgUCGuCCuCGCCCu -3'
miRNA:   3'- aGAGcC-GCCGCGAGaa--GGC-GG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 33516 0.66 0.583977
Target:  5'- --gCGGCGGCGgca--CCGCUgGCCCc -3'
miRNA:   3'- agaGCCGCCGCgagaaGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 95197 0.66 0.583977
Target:  5'- cCUgGGaccCGCg---CCGCCCGCCCg -3'
miRNA:   3'- aGAgCCgccGCGagaaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 42897 0.67 0.526735
Target:  5'- gCUCGGCacgugacccGGCGCUCcggggCCGCCgGgCg -3'
miRNA:   3'- aGAGCCG---------CCGCGAGaa---GGCGGgCgGg -5'
23601 3' -63.3 NC_005261.1 + 53538 0.67 0.526735
Target:  5'- --cCGuGuuGCGCUCUUCgGCCgCGCCg -3'
miRNA:   3'- agaGC-CgcCGCGAGAAGgCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 129220 0.67 0.526735
Target:  5'- gCUgGuGCGGCGCcucaaguggCUcCCGCCCaGCCUc -3'
miRNA:   3'- aGAgC-CGCCGCGa--------GAaGGCGGG-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 131771 0.67 0.526735
Target:  5'- --gCGGCgGGCGCgccgCUgggccccgaCGCCgCGCCCg -3'
miRNA:   3'- agaGCCG-CCGCGa---GAag-------GCGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 27979 0.67 0.526735
Target:  5'- cUUCcGCGcGCGCuUCUcCCGCCgGCCUc -3'
miRNA:   3'- aGAGcCGC-CGCG-AGAaGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 59564 0.67 0.530493
Target:  5'- -aUCGGCGcGCGCgcgCgccgcagcgggugCCGCgCCGCCa -3'
miRNA:   3'- agAGCCGC-CGCGa--Gaa-----------GGCG-GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 118517 0.67 0.536148
Target:  5'- gCUCGGCgaGGCGCcCUgccCCGCCgacCCCu -3'
miRNA:   3'- aGAGCCG--CCGCGaGAa--GGCGGgc-GGG- -5'
23601 3' -63.3 NC_005261.1 + 46991 0.67 0.536148
Target:  5'- --cCGGCaGCGCgcg-CCGCgCCGCCg -3'
miRNA:   3'- agaGCCGcCGCGagaaGGCG-GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 106734 0.67 0.536148
Target:  5'- cCUCGuGCagccccGGCGC-CUcCgCGCCCGCCa -3'
miRNA:   3'- aGAGC-CG------CCGCGaGAaG-GCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 121390 0.67 0.536148
Target:  5'- --gCGGCGGCGg-----CGCCUGCCCg -3'
miRNA:   3'- agaGCCGCCGCgagaagGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 123714 0.67 0.536148
Target:  5'- aCUCGGCcaucagcaGCGUcgUCgcggUCCGCaCCGCCa -3'
miRNA:   3'- aGAGCCGc-------CGCG--AGa---AGGCG-GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 73451 0.67 0.536148
Target:  5'- --cCGGCcGCGUcCgcgUCCGCgCGCCCc -3'
miRNA:   3'- agaGCCGcCGCGaGa--AGGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 24039 0.67 0.526735
Target:  5'- gUUCGGgugGGCGUcCUUgggugggCGCCCGCCCg -3'
miRNA:   3'- aGAGCCg--CCGCGaGAAg------GCGGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.