miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 90911 1.11 0.000425
Target:  5'- gUCUCGGCGGCGCUCUUCCGCCCGCCCa -3'
miRNA:   3'- -AGAGCCGCCGCGAGAAGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 95035 0.82 0.055632
Target:  5'- --cCGGCGGCGCUCggcgCCGCagaCCGCCCu -3'
miRNA:   3'- agaGCCGCCGCGAGaa--GGCG---GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 83320 0.81 0.071891
Target:  5'- gCUCgGGCGGCGCcacgCCGCCCGCCg -3'
miRNA:   3'- aGAG-CCGCCGCGagaaGGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 74959 0.81 0.070079
Target:  5'- gCUCGGC-GCGCUCgaggCCGCgCGCCCg -3'
miRNA:   3'- aGAGCCGcCGCGAGaa--GGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 1594 0.8 0.083747
Target:  5'- -gUUGGCGGCGCgguggCUggCCGCCuCGCCCu -3'
miRNA:   3'- agAGCCGCCGCGa----GAa-GGCGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 103736 0.78 0.110469
Target:  5'- uUCUuggCGGCGGCGC-CcUCCGCCUGCgCCu -3'
miRNA:   3'- -AGA---GCCGCCGCGaGaAGGCGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 128707 0.78 0.104552
Target:  5'- gCUCGGgaGGCGCgcccgggccCCGCCCGCCCg -3'
miRNA:   3'- aGAGCCg-CCGCGagaa-----GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 118638 0.78 0.107741
Target:  5'- --gCGGCGGCGCUCUgggccccgggCCGCgCGCUCg -3'
miRNA:   3'- agaGCCGCCGCGAGAa---------GGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 91274 0.78 0.107741
Target:  5'- --aCGGCGGaGCUgagCCGCCCGCCCg -3'
miRNA:   3'- agaGCCGCCgCGAgaaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 41067 0.77 0.134719
Target:  5'- --cCGGCGGCGCgg-UCCGCCgccaGCCCc -3'
miRNA:   3'- agaGCCGCCGCGagaAGGCGGg---CGGG- -5'
23601 3' -63.3 NC_005261.1 + 97548 0.77 0.125099
Target:  5'- --cCGGCGGUGC-CggcCCGUCCGCCCg -3'
miRNA:   3'- agaGCCGCCGCGaGaa-GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 11263 0.77 0.134719
Target:  5'- gUCUCGGU--CGCUCUgUCCGUCCGUCCg -3'
miRNA:   3'- -AGAGCCGccGCGAGA-AGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 91873 0.77 0.125099
Target:  5'- cCUCGGCGuccgucGCGCUCUguugUCUGCCCccGCCCc -3'
miRNA:   3'- aGAGCCGC------CGCGAGA----AGGCGGG--CGGG- -5'
23601 3' -63.3 NC_005261.1 + 71241 0.75 0.171886
Target:  5'- cCUCGGCGGCGCag--CCGagcCCCGCgCCg -3'
miRNA:   3'- aGAGCCGCCGCGagaaGGC---GGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 4908 0.75 0.180343
Target:  5'- cUUCGGCGGCgGCUgCcUCCGCCgcggccgcgagCGCCCg -3'
miRNA:   3'- aGAGCCGCCG-CGA-GaAGGCGG-----------GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 96591 0.75 0.180343
Target:  5'- --cCGGCGGCGCUCUgCCGCagcaCGUCg -3'
miRNA:   3'- agaGCCGCCGCGAGAaGGCGg---GCGGg -5'
23601 3' -63.3 NC_005261.1 + 91475 0.75 0.171886
Target:  5'- cCUCccaGCGGCGCcgccgCggccgCCGCCCGCCCc -3'
miRNA:   3'- aGAGc--CGCCGCGa----Gaa---GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 15365 0.75 0.159864
Target:  5'- gUCcCGGCGGCGCUCggcgcccUCgGCgCCGCCg -3'
miRNA:   3'- -AGaGCCGCCGCGAGa------AGgCG-GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 76597 0.75 0.167792
Target:  5'- ---gGGUGGCGCgcgcgCUgCCGCCCGCCg -3'
miRNA:   3'- agagCCGCCGCGa----GAaGGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 125421 0.75 0.171886
Target:  5'- ---gGGCGGCGCUCaggCCGCCCauCCCu -3'
miRNA:   3'- agagCCGCCGCGAGaa-GGCGGGc-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.