miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 134095 0.74 0.198367
Target:  5'- cUCUCGGCGcgccggcgcGCGCUCgccgccgacUUCCGCCuCGaCCCc -3'
miRNA:   3'- -AGAGCCGC---------CGCGAG---------AAGGCGG-GC-GGG- -5'
23601 3' -63.3 NC_005261.1 + 92155 0.74 0.189166
Target:  5'- cCUCGGCGagcgcGCGCUCgguggagCCGCCgGgCCCg -3'
miRNA:   3'- aGAGCCGC-----CGCGAGaa-----GGCGGgC-GGG- -5'
23601 3' -63.3 NC_005261.1 + 3892 0.74 0.193719
Target:  5'- gCUCGGCGaGCGCggcgCgggCGCCCGCgCCg -3'
miRNA:   3'- aGAGCCGC-CGCGa---GaagGCGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 33167 0.73 0.238595
Target:  5'- --gCGGCGGCcgagccgccguccGCcCUgccccCCGCCCGCCCg -3'
miRNA:   3'- agaGCCGCCG-------------CGaGAa----GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 59691 0.73 0.217943
Target:  5'- cCUCGGCcagcacGCGCUCcgggcagacCCGCCCGCCg -3'
miRNA:   3'- aGAGCCGc-----CGCGAGaa-------GGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 82365 0.73 0.228336
Target:  5'- -gUCGGCGcGCGCgcgCgccgccagcgCCGCCCaGCCCg -3'
miRNA:   3'- agAGCCGC-CGCGa--Gaa--------GGCGGG-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 33742 0.73 0.217943
Target:  5'- cCUCGcGCGGCGC-CggggCCggGCCCGCUCg -3'
miRNA:   3'- aGAGC-CGCCGCGaGaa--GG--CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 29810 0.73 0.244709
Target:  5'- --cCGGCGGCGCggg--CGCCCGCgCCg -3'
miRNA:   3'- agaGCCGCCGCGagaagGCGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 30256 0.73 0.239146
Target:  5'- aCUCGacgcGCGGCGCggCggcCCGCgCGCCCg -3'
miRNA:   3'- aGAGC----CGCCGCGa-Gaa-GGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 59504 0.73 0.244709
Target:  5'- --gCGGCGGCGgUCgcaCGCgCGCCCu -3'
miRNA:   3'- agaGCCGCCGCgAGaagGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 101576 0.72 0.262046
Target:  5'- gCUCGGCGcGCGCcguggCcUCCGCgCGCgCCg -3'
miRNA:   3'- aGAGCCGC-CGCGa----GaAGGCGgGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 116520 0.72 0.268043
Target:  5'- --gCGGCGGCGCgaggCccgCCGCUccgCGCCCg -3'
miRNA:   3'- agaGCCGCCGCGa---Gaa-GGCGG---GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 58633 0.72 0.27415
Target:  5'- gCagGGC-GCGCUCg-CCGCCCGCCa -3'
miRNA:   3'- aGagCCGcCGCGAGaaGGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 103374 0.72 0.27415
Target:  5'- gCUCGGCcGCGCg---CCGCCgCGCCg -3'
miRNA:   3'- aGAGCCGcCGCGagaaGGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 120248 0.72 0.25038
Target:  5'- cUUCGccGCGGCuGCcacgccggccgUCUaCCGCCCGCCCg -3'
miRNA:   3'- aGAGC--CGCCG-CG-----------AGAaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 5120 0.72 0.272306
Target:  5'- gCUCGGCgcgggcggcccgccGGCGCUCgcgCGCCUcgGCCCg -3'
miRNA:   3'- aGAGCCG--------------CCGCGAGaagGCGGG--CGGG- -5'
23601 3' -63.3 NC_005261.1 + 89415 0.72 0.256158
Target:  5'- cCUCGGCGcGUGCgCggCCGCCgggcuccccgCGCCCg -3'
miRNA:   3'- aGAGCCGC-CGCGaGaaGGCGG----------GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 59736 0.72 0.256158
Target:  5'- --gCGGCGGCGCgCggCCGCCC-UCCa -3'
miRNA:   3'- agaGCCGCCGCGaGaaGGCGGGcGGG- -5'
23601 3' -63.3 NC_005261.1 + 99228 0.72 0.256158
Target:  5'- --gCGGCaGGCGCgUCggcgUCgCGCCCGCCg -3'
miRNA:   3'- agaGCCG-CCGCG-AGa---AG-GCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 22812 0.72 0.268043
Target:  5'- --gCGGCGGCGCUg--CCGCcgCCGCCg -3'
miRNA:   3'- agaGCCGCCGCGAgaaGGCG--GGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.