Results 41 - 60 of 277 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23601 | 3' | -63.3 | NC_005261.1 | + | 86591 | 0.72 | 0.256158 |
Target: 5'- --gCGGCGGCGCcguccuuggcgUCggCCGCgCCGCCg -3' miRNA: 3'- agaGCCGCCGCG-----------AGaaGGCG-GGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 115110 | 0.72 | 0.280368 |
Target: 5'- cCUCGGCGGCGCU-----GCCCacggcGCCCa -3' miRNA: 3'- aGAGCCGCCGCGAgaaggCGGG-----CGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 88826 | 0.72 | 0.280368 |
Target: 5'- --gCGGCGGCGCg----CGCCgGCCCg -3' miRNA: 3'- agaGCCGCCGCGagaagGCGGgCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 120248 | 0.72 | 0.25038 |
Target: 5'- cUUCGccGCGGCuGCcacgccggccgUCUaCCGCCCGCCCg -3' miRNA: 3'- aGAGC--CGCCG-CG-----------AGAaGGCGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 22812 | 0.72 | 0.268043 |
Target: 5'- --gCGGCGGCGCUg--CCGCcgCCGCCg -3' miRNA: 3'- agaGCCGCCGCGAgaaGGCG--GGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 10036 | 0.72 | 0.286698 |
Target: 5'- -gUCGGgGGCGCUCgcucaCCgGCCCGaCCUc -3' miRNA: 3'- agAGCCgCCGCGAGaa---GG-CGGGC-GGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 30297 | 0.72 | 0.27415 |
Target: 5'- --cUGGCccgcGCGCUCUUCaGCCCGCCg -3' miRNA: 3'- agaGCCGc---CGCGAGAAGgCGGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 58633 | 0.72 | 0.27415 |
Target: 5'- gCagGGC-GCGCUCg-CCGCCCGCCa -3' miRNA: 3'- aGagCCGcCGCGAGaaGGCGGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 99228 | 0.72 | 0.256158 |
Target: 5'- --gCGGCaGGCGCgUCggcgUCgCGCCCGCCg -3' miRNA: 3'- agaGCCG-CCGCG-AGa---AG-GCGGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 103799 | 0.71 | 0.306361 |
Target: 5'- cUUCGGUGuGCGCcgUUgCGCCCGCCg -3' miRNA: 3'- aGAGCCGC-CGCGagAAgGCGGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 119486 | 0.71 | 0.32704 |
Target: 5'- cCUUGGggacgcCGGCGCcg--CCGCCCGCCa -3' miRNA: 3'- aGAGCC------GCCGCGagaaGGCGGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 106408 | 0.71 | 0.29314 |
Target: 5'- aUC-CGcGCGGCGCUgcagcgggcCgcggUCCacGCCCGCCCa -3' miRNA: 3'- -AGaGC-CGCCGCGA---------Ga---AGG--CGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 99012 | 0.71 | 0.29314 |
Target: 5'- gUCgcgagCGGCGGCGCggcggCGCgCGCCCa -3' miRNA: 3'- -AGa----GCCGCCGCGagaagGCGgGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 36847 | 0.71 | 0.320034 |
Target: 5'- --cCGGgGGCuaGCcCgcgcUCCGCCCGCCCc -3' miRNA: 3'- agaGCCgCCG--CGaGa---AGGCGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 106305 | 0.71 | 0.291195 |
Target: 5'- cCUCGGCGaGCaGgUCUUCCGucgugagccacggcCCCGCCg -3' miRNA: 3'- aGAGCCGC-CG-CgAGAAGGC--------------GGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 56060 | 0.71 | 0.313141 |
Target: 5'- gUUCGGgGGCGCcCUgggcgagcagUCCGCUCGCUa -3' miRNA: 3'- aGAGCCgCCGCGaGA----------AGGCGGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 119807 | 0.71 | 0.320034 |
Target: 5'- gCUgGGCGGCaacuacaUCUUCCcCUCGCCCg -3' miRNA: 3'- aGAgCCGCCGcg-----AGAAGGcGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 31060 | 0.71 | 0.29314 |
Target: 5'- --gCGGCGGgaGCcgCcgCUGCCCGCCCg -3' miRNA: 3'- agaGCCGCCg-CGa-GaaGGCGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 117473 | 0.71 | 0.319339 |
Target: 5'- -gUCGGCGGCgacgcGCUgcugcgcuucuacCUUgCGCCCGCCg -3' miRNA: 3'- agAGCCGCCG-----CGA-------------GAAgGCGGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 109806 | 0.71 | 0.320034 |
Target: 5'- --aCGGcCGGCGCcgCUUCCGCcgcggcggCCGCCg -3' miRNA: 3'- agaGCC-GCCGCGa-GAAGGCG--------GGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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