miRNA display CGI


Results 61 - 80 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 119807 0.71 0.320034
Target:  5'- gCUgGGCGGCaacuacaUCUUCCcCUCGCCCg -3'
miRNA:   3'- aGAgCCGCCGcg-----AGAAGGcGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 56060 0.71 0.313141
Target:  5'- gUUCGGgGGCGCcCUgggcgagcagUCCGCUCGCUa -3'
miRNA:   3'- aGAGCCgCCGCGaGA----------AGGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 31107 0.7 0.333442
Target:  5'- --cCGGCGGCcccgccgccgacgGCggCUUCCGCcgcgugCCGCCCg -3'
miRNA:   3'- agaGCCGCCG-------------CGa-GAAGGCG------GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 104530 0.7 0.346521
Target:  5'- --aCGGCGGCcgccaccaggcgcaGCUUggcgUCCGCCagguCGCCCa -3'
miRNA:   3'- agaGCCGCCG--------------CGAGa---AGGCGG----GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 104275 0.7 0.341391
Target:  5'- gUCUCGGCGGCuGCgCgggCCucgcagGCCCGCgCg -3'
miRNA:   3'- -AGAGCCGCCG-CGaGaa-GG------CGGGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 105966 0.7 0.356192
Target:  5'- cCUCGGCGcccaGCGCggcgUCgacgCCGCCCGCg- -3'
miRNA:   3'- aGAGCCGC----CGCG----AGaa--GGCGGGCGgg -5'
23601 3' -63.3 NC_005261.1 + 58994 0.7 0.348736
Target:  5'- aCgggCGGCGGUGCg---CCggGCUCGCCCa -3'
miRNA:   3'- aGa--GCCGCCGCGagaaGG--CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 135138 0.7 0.356192
Target:  5'- --gCGGCGGgggagacgaCGCcgCcUCCGCCCGCUCg -3'
miRNA:   3'- agaGCCGCC---------GCGa-GaAGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 17544 0.7 0.348736
Target:  5'- aCUgGGCGGCGCgg----GCCCGCCg -3'
miRNA:   3'- aGAgCCGCCGCGagaaggCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 122331 0.7 0.356192
Target:  5'- -gUCaGGUGGCGCUCgcagaGCUCGCCUg -3'
miRNA:   3'- agAG-CCGCCGCGAGaagg-CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 97222 0.7 0.334159
Target:  5'- gCUCGGaGGCGCUgg--CGCCgGCCCg -3'
miRNA:   3'- aGAGCCgCCGCGAgaagGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 53331 0.7 0.356192
Target:  5'- ---aGGUGuGCGcCUCUg-CGCCCGCCCc -3'
miRNA:   3'- agagCCGC-CGC-GAGAagGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 55001 0.7 0.351705
Target:  5'- --cCGGCGGCcucgugcacaacgacGCUCccguagCCGCCgGCCCc -3'
miRNA:   3'- agaGCCGCCG---------------CGAGaa----GGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 39797 0.7 0.334159
Target:  5'- ---gGGCGGCGCgg--CCGCCgGCgCCa -3'
miRNA:   3'- agagCCGCCGCGagaaGGCGGgCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 70579 0.7 0.341391
Target:  5'- gCUCgGGCGcgaGCGCagCggcgUgCGCCCGCCCg -3'
miRNA:   3'- aGAG-CCGC---CGCGa-Ga---AgGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 94034 0.7 0.341391
Target:  5'- uUCUCGGCGGC-C-CggCgCGCCCcCCCa -3'
miRNA:   3'- -AGAGCCGCCGcGaGaaG-GCGGGcGGG- -5'
23601 3' -63.3 NC_005261.1 + 133785 0.7 0.371438
Target:  5'- cCUCGuGCGGCGCaUC--CCGCCCgggcuGCUCg -3'
miRNA:   3'- aGAGC-CGCCGCG-AGaaGGCGGG-----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 71840 0.7 0.337761
Target:  5'- --gCGGCgaaguccgccacuGGCGCUCgcgccgcuugcggUCCGCCCGCgCg -3'
miRNA:   3'- agaGCCG-------------CCGCGAGa------------AGGCGGGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 97144 0.7 0.334159
Target:  5'- gCUCGGaGGCGCUgg--CGCCgGCCCg -3'
miRNA:   3'- aGAGCCgCCGCGAgaagGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 74365 0.7 0.341391
Target:  5'- ---gGGCGGcCGCg--UCCGCCCccGCCCc -3'
miRNA:   3'- agagCCGCC-GCGagaAGGCGGG--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.