miRNA display CGI


Results 81 - 100 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 39797 0.7 0.334159
Target:  5'- ---gGGCGGCGCgg--CCGCCgGCgCCa -3'
miRNA:   3'- agagCCGCCGCGagaaGGCGGgCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 10855 0.7 0.36376
Target:  5'- aUCUCGGaCGGCgaggacgacguGUUCUUCC-CCgaGCCCg -3'
miRNA:   3'- -AGAGCC-GCCG-----------CGAGAAGGcGGg-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 31107 0.7 0.333442
Target:  5'- --cCGGCGGCcccgccgccgacgGCggCUUCCGCcgcgugCCGCCCg -3'
miRNA:   3'- agaGCCGCCG-------------CGa-GAAGGCG------GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 94034 0.7 0.341391
Target:  5'- uUCUCGGCGGC-C-CggCgCGCCCcCCCa -3'
miRNA:   3'- -AGAGCCGCCGcGaGaaG-GCGGGcGGG- -5'
23601 3' -63.3 NC_005261.1 + 133785 0.7 0.371438
Target:  5'- cCUCGuGCGGCGCaUC--CCGCCCgggcuGCUCg -3'
miRNA:   3'- aGAGC-CGCCGCG-AGaaGGCGGG-----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 118581 0.7 0.371438
Target:  5'- --gCGGCGGCGCgcg-CCGC-CGCCg -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCGgGCGGg -5'
23601 3' -63.3 NC_005261.1 + 104098 0.7 0.371438
Target:  5'- --gCGGCGGCGCUCcgcgcgaCCGCagCCGCgCg -3'
miRNA:   3'- agaGCCGCCGCGAGaa-----GGCG--GGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 115489 0.7 0.36376
Target:  5'- cUCggccgCGGCGGCGCg---CCGCa-GCCCc -3'
miRNA:   3'- -AGa----GCCGCCGCGagaaGGCGggCGGG- -5'
23601 3' -63.3 NC_005261.1 + 99471 0.7 0.36376
Target:  5'- --gCGGCGGCGCUggccgCUgcggccagcgCCGCCgCGUCCu -3'
miRNA:   3'- agaGCCGCCGCGA-----GAa---------GGCGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 16733 0.69 0.419772
Target:  5'- cCUCGGCGagccGCGCgggcgCCGCCaugaccaGCCCc -3'
miRNA:   3'- aGAGCCGC----CGCGagaa-GGCGGg------CGGG- -5'
23601 3' -63.3 NC_005261.1 + 6140 0.69 0.426499
Target:  5'- -gUCGGCGGCgacgguGCUCgccuuauuauagUCCcuuugaagGCCCGCCUa -3'
miRNA:   3'- agAGCCGCCG------CGAGa-----------AGG--------CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 70536 0.69 0.428191
Target:  5'- --aCGGCGGCGCccgCgccCCaCCCGCCg -3'
miRNA:   3'- agaGCCGCCGCGa--Gaa-GGcGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 105481 0.69 0.419772
Target:  5'- cCUCGG-GGCGCgCgggCCccgaGCCCGCCg -3'
miRNA:   3'- aGAGCCgCCGCGaGaa-GG----CGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 137997 0.69 0.419772
Target:  5'- gCUgCGGCGGCgGCUgCggCgGCCCgcaGCCCg -3'
miRNA:   3'- aGA-GCCGCCG-CGA-GaaGgCGGG---CGGG- -5'
23601 3' -63.3 NC_005261.1 + 118843 0.69 0.419772
Target:  5'- gCUCuGCGGCGCggagggCgGCgCGCCCg -3'
miRNA:   3'- aGAGcCGCCGCGagaa--GgCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 115771 0.69 0.411454
Target:  5'- gUCUCGGCGGCG-UCgacguaCGCguaGCCCa -3'
miRNA:   3'- -AGAGCCGCCGCgAGaag---GCGgg-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 326 0.69 0.419772
Target:  5'- gCUgCGGCGGCgGCUgCggCgGCCCgcaGCCCg -3'
miRNA:   3'- aGA-GCCGCCG-CGA-GaaGgCGGG---CGGG- -5'
23601 3' -63.3 NC_005261.1 + 88763 0.69 0.418936
Target:  5'- --gUGGCGGCGCUgcgcuccucggccCUggCCGCCgGCgCCg -3'
miRNA:   3'- agaGCCGCCGCGA-------------GAa-GGCGGgCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 27512 0.69 0.419772
Target:  5'- gUCUgGGCGG-GCcagCUgg-GCCCGCCCu -3'
miRNA:   3'- -AGAgCCGCCgCGa--GAaggCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 102587 0.69 0.427345
Target:  5'- -gUCGGCGGCcucgcccgcGC-CUUCCGCguccucgCCGCCa -3'
miRNA:   3'- agAGCCGCCG---------CGaGAAGGCG-------GGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.