miRNA display CGI


Results 101 - 120 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 111617 0.69 0.411454
Target:  5'- gCUgGGCugcGGCGC-CgugccgccgCCGCCCGCCg -3'
miRNA:   3'- aGAgCCG---CCGCGaGaa-------GGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 1307 0.69 0.403239
Target:  5'- gUCgccggCGGCGGCacgcGCUCcgggacgCCGCCgCGCCg -3'
miRNA:   3'- -AGa----GCCGCCG----CGAGaa-----GGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 137997 0.69 0.419772
Target:  5'- gCUgCGGCGGCgGCUgCggCgGCCCgcaGCCCg -3'
miRNA:   3'- aGA-GCCGCCG-CGA-GaaGgCGGG---CGGG- -5'
23601 3' -63.3 NC_005261.1 + 113112 0.69 0.387124
Target:  5'- gCUCGGCauGGacauGCUCU--CGCCCGCCg -3'
miRNA:   3'- aGAGCCG--CCg---CGAGAagGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 131148 0.69 0.380011
Target:  5'- gUCUCuuuuGCGGCGCUCgccgccuucugcugCCGCagcggcuaCGCCCg -3'
miRNA:   3'- -AGAGc---CGCCGCGAGaa------------GGCGg-------GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 71515 0.69 0.387124
Target:  5'- -gUCGGCGG-GCUCgUCCGCguacgaCGCCa -3'
miRNA:   3'- agAGCCGCCgCGAGaAGGCGg-----GCGGg -5'
23601 3' -63.3 NC_005261.1 + 124260 0.69 0.387124
Target:  5'- --cCGcGCGGCGC-CgcCCGCgCGCCCc -3'
miRNA:   3'- agaGC-CGCCGCGaGaaGGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 100230 0.69 0.395128
Target:  5'- gCUCGGCcaccgccgGGCGCacgUCUGCCaGCCCc -3'
miRNA:   3'- aGAGCCG--------CCGCGagaAGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 83563 0.69 0.387124
Target:  5'- aCUCGGCgGGCGUgc--CCGCggCGCCCg -3'
miRNA:   3'- aGAGCCG-CCGCGagaaGGCGg-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 69633 0.69 0.395128
Target:  5'- --aCGGCGuGCGCUac-CUGCgCGCCCu -3'
miRNA:   3'- agaGCCGC-CGCGAgaaGGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 63749 0.69 0.379227
Target:  5'- --gCGGCGGCGUagg-CCGCCguguaGCCCa -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCGGg----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 45413 0.69 0.403239
Target:  5'- cCUgCuGCGGCGC-CUgcgcccgCCGCCCGCgCg -3'
miRNA:   3'- aGA-GcCGCCGCGaGAa------GGCGGGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 98306 0.69 0.403239
Target:  5'- cCUCGGgGGCGggCgccgCCGCCagcggcggcgCGCCCc -3'
miRNA:   3'- aGAGCCgCCGCgaGaa--GGCGG----------GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 132382 0.69 0.403239
Target:  5'- gCUC-GCGGCGCUgUUCCccgaGgCCGCCg -3'
miRNA:   3'- aGAGcCGCCGCGAgAAGG----CgGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 29966 0.69 0.411454
Target:  5'- gCUagaGGCGGCGCggugcgCCGCCgGCgCg -3'
miRNA:   3'- aGAg--CCGCCGCGagaa--GGCGGgCGgG- -5'
23601 3' -63.3 NC_005261.1 + 115771 0.69 0.411454
Target:  5'- gUCUCGGCGGCG-UCgacguaCGCguaGCCCa -3'
miRNA:   3'- -AGAGCCGCCGCgAGaag---GCGgg-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 88763 0.69 0.418936
Target:  5'- --gUGGCGGCGCUgcgcuccucggccCUggCCGCCgGCgCCg -3'
miRNA:   3'- agaGCCGCCGCGA-------------GAa-GGCGGgCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 11932 0.69 0.419772
Target:  5'- gCUgCGGCGGCccGCgccgCggCgGCUCGCCCg -3'
miRNA:   3'- aGA-GCCGCCG--CGa---GaaGgCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 27512 0.69 0.419772
Target:  5'- gUCUgGGCGG-GCcagCUgg-GCCCGCCCu -3'
miRNA:   3'- -AGAgCCGCCgCGa--GAaggCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 105481 0.69 0.419772
Target:  5'- cCUCGG-GGCGCgCgggCCccgaGCCCGCCg -3'
miRNA:   3'- aGAGCCgCCGCGaGaa-GG----CGGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.