miRNA display CGI


Results 41 - 60 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 30297 0.72 0.27415
Target:  5'- --cUGGCccgcGCGCUCUUCaGCCCGCCg -3'
miRNA:   3'- agaGCCGc---CGCGAGAAGgCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 58633 0.72 0.27415
Target:  5'- gCagGGC-GCGCUCg-CCGCCCGCCa -3'
miRNA:   3'- aGagCCGcCGCGAGaaGGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 103374 0.72 0.27415
Target:  5'- gCUCGGCcGCGCg---CCGCCgCGCCg -3'
miRNA:   3'- aGAGCCGcCGCGagaaGGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 35064 0.72 0.27415
Target:  5'- --gCGGCGGCGgUC-UCCGCgcccccUCGCCCu -3'
miRNA:   3'- agaGCCGCCGCgAGaAGGCG------GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 8792 0.72 0.276624
Target:  5'- cCUCGGCGGCuGCag--CCGCCgagggcuugaaggggCGCCCg -3'
miRNA:   3'- aGAGCCGCCG-CGagaaGGCGG---------------GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 88826 0.72 0.280368
Target:  5'- --gCGGCGGCGCg----CGCCgGCCCg -3'
miRNA:   3'- agaGCCGCCGCGagaagGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 115110 0.72 0.280368
Target:  5'- cCUCGGCGGCGCU-----GCCCacggcGCCCa -3'
miRNA:   3'- aGAGCCGCCGCGAgaaggCGGG-----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 36698 0.72 0.286698
Target:  5'- cCUCGGCcccccGCGCUga-CCGCCgGCCCu -3'
miRNA:   3'- aGAGCCGc----CGCGAgaaGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 10036 0.72 0.286698
Target:  5'- -gUCGGgGGCGCUCgcucaCCgGCCCGaCCUc -3'
miRNA:   3'- agAGCCgCCGCGAGaa---GG-CGGGC-GGG- -5'
23601 3' -63.3 NC_005261.1 + 106305 0.71 0.291195
Target:  5'- cCUCGGCGaGCaGgUCUUCCGucgugagccacggcCCCGCCg -3'
miRNA:   3'- aGAGCCGC-CG-CgAGAAGGC--------------GGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 104461 0.71 0.29314
Target:  5'- --cCGGCGGCGC-CgUCCaCCuCGCCCu -3'
miRNA:   3'- agaGCCGCCGCGaGaAGGcGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 106408 0.71 0.29314
Target:  5'- aUC-CGcGCGGCGCUgcagcgggcCgcggUCCacGCCCGCCCa -3'
miRNA:   3'- -AGaGC-CGCCGCGA---------Ga---AGG--CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 99012 0.71 0.29314
Target:  5'- gUCgcgagCGGCGGCGCggcggCGCgCGCCCa -3'
miRNA:   3'- -AGa----GCCGCCGCGagaagGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 31060 0.71 0.29314
Target:  5'- --gCGGCGGgaGCcgCcgCUGCCCGCCCg -3'
miRNA:   3'- agaGCCGCCg-CGa-GaaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 97413 0.71 0.306361
Target:  5'- gCUUGGCgGGCGCg---CCggGCCUGCCCu -3'
miRNA:   3'- aGAGCCG-CCGCGagaaGG--CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 103799 0.71 0.306361
Target:  5'- cUUCGGUGuGCGCcgUUgCGCCCGCCg -3'
miRNA:   3'- aGAGCCGC-CGCGagAAgGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 56060 0.71 0.313141
Target:  5'- gUUCGGgGGCGCcCUgggcgagcagUCCGCUCGCUa -3'
miRNA:   3'- aGAGCCgCCGCGaGA----------AGGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 117473 0.71 0.319339
Target:  5'- -gUCGGCGGCgacgcGCUgcugcgcuucuacCUUgCGCCCGCCg -3'
miRNA:   3'- agAGCCGCCG-----CGA-------------GAAgGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 119807 0.71 0.320034
Target:  5'- gCUgGGCGGCaacuacaUCUUCCcCUCGCCCg -3'
miRNA:   3'- aGAgCCGCCGcg-----AGAAGGcGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 36847 0.71 0.320034
Target:  5'- --cCGGgGGCuaGCcCgcgcUCCGCCCGCCCc -3'
miRNA:   3'- agaGCCgCCG--CGaGa---AGGCGGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.