miRNA display CGI


Results 81 - 100 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 106542 0.7 0.356192
Target:  5'- cCUCGGCGGCgGC-CgcgUCCgggccggcgcgcGCCgGCCCc -3'
miRNA:   3'- aGAGCCGCCG-CGaGa--AGG------------CGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 14534 0.7 0.36376
Target:  5'- --gCGGUGGCGCgg--CCGCCCGgcgaCCa -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCGGGCg---GG- -5'
23601 3' -63.3 NC_005261.1 + 65824 0.7 0.36376
Target:  5'- --gCGGCGGCGCgaagCUGCCCGagugCCg -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCGGGCg---GG- -5'
23601 3' -63.3 NC_005261.1 + 10855 0.7 0.36376
Target:  5'- aUCUCGGaCGGCgaggacgacguGUUCUUCC-CCgaGCCCg -3'
miRNA:   3'- -AGAGCC-GCCG-----------CGAGAAGGcGGg-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 99471 0.7 0.36376
Target:  5'- --gCGGCGGCGCUggccgCUgcggccagcgCCGCCgCGUCCu -3'
miRNA:   3'- agaGCCGCCGCGA-----GAa---------GGCGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 115489 0.7 0.36376
Target:  5'- cUCggccgCGGCGGCGCg---CCGCa-GCCCc -3'
miRNA:   3'- -AGa----GCCGCCGCGagaaGGCGggCGGG- -5'
23601 3' -63.3 NC_005261.1 + 133785 0.7 0.371438
Target:  5'- cCUCGuGCGGCGCaUC--CCGCCCgggcuGCUCg -3'
miRNA:   3'- aGAGC-CGCCGCG-AGaaGGCGGG-----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 118581 0.7 0.371438
Target:  5'- --gCGGCGGCGCgcg-CCGC-CGCCg -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCGgGCGGg -5'
23601 3' -63.3 NC_005261.1 + 104098 0.7 0.371438
Target:  5'- --gCGGCGGCGCUCcgcgcgaCCGCagCCGCgCg -3'
miRNA:   3'- agaGCCGCCGCGAGaa-----GGCG--GGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 77461 0.69 0.37766
Target:  5'- --cCGG-GGCGCggCUgcagccgcgcccCCGCCCGCCCc -3'
miRNA:   3'- agaGCCgCCGCGa-GAa-----------GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 63749 0.69 0.379227
Target:  5'- --gCGGCGGCGUagg-CCGCCguguaGCCCa -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCGGg----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 131148 0.69 0.380011
Target:  5'- gUCUCuuuuGCGGCGCUCgccgccuucugcugCCGCagcggcuaCGCCCg -3'
miRNA:   3'- -AGAGc---CGCCGCGAGaa------------GGCGg-------GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 124260 0.69 0.387124
Target:  5'- --cCGcGCGGCGC-CgcCCGCgCGCCCc -3'
miRNA:   3'- agaGC-CGCCGCGaGaaGGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 29312 0.69 0.387124
Target:  5'- --cCGGCaGCGCgccgCcgCCGCCCGgCCg -3'
miRNA:   3'- agaGCCGcCGCGa---GaaGGCGGGCgGG- -5'
23601 3' -63.3 NC_005261.1 + 113112 0.69 0.387124
Target:  5'- gCUCGGCauGGacauGCUCU--CGCCCGCCg -3'
miRNA:   3'- aGAGCCG--CCg---CGAGAagGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 108742 0.69 0.387124
Target:  5'- --gCGGCGGCGCcgCggcgUCCGCggcgcgCCGCgCCa -3'
miRNA:   3'- agaGCCGCCGCGa-Ga---AGGCG------GGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 83563 0.69 0.387124
Target:  5'- aCUCGGCgGGCGUgc--CCGCggCGCCCg -3'
miRNA:   3'- aGAGCCG-CCGCGagaaGGCGg-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 71515 0.69 0.387124
Target:  5'- -gUCGGCGG-GCUCgUCCGCguacgaCGCCa -3'
miRNA:   3'- agAGCCGCCgCGAGaAGGCGg-----GCGGg -5'
23601 3' -63.3 NC_005261.1 + 18535 0.69 0.395128
Target:  5'- --aCGGCGGCGUcCcgCgGCCCGCUg -3'
miRNA:   3'- agaGCCGCCGCGaGaaGgCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 69633 0.69 0.395128
Target:  5'- --aCGGCGuGCGCUac-CUGCgCGCCCu -3'
miRNA:   3'- agaGCCGC-CGCGAgaaGGCGgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.