miRNA display CGI


Results 41 - 60 of 277 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 54234 0.66 0.564712
Target:  5'- gUCacgCGGCGcGCGCUCaugUgCaGCgCGCCCu -3'
miRNA:   3'- -AGa--GCCGC-CGCGAGa--AgG-CGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 102460 0.66 0.564712
Target:  5'- nCUCGGCgcgcaGGCGCcggaccuccUCggcgcgCCGCCgCGCCa -3'
miRNA:   3'- aGAGCCG-----CCGCG---------AGaa----GGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 6367 0.66 0.563753
Target:  5'- gUC-CGGCGcCGCUCccccuuucccccgUUCCGCCC-CCUu -3'
miRNA:   3'- -AGaGCCGCcGCGAG-------------AAGGCGGGcGGG- -5'
23601 3' -63.3 NC_005261.1 + 100847 0.66 0.560878
Target:  5'- gCUCGGCGaccuGCGCgUCgaaggCCGCCagaagcgcgcgcaGCCCc -3'
miRNA:   3'- aGAGCCGC----CGCG-AGaa---GGCGGg------------CGGG- -5'
23601 3' -63.3 NC_005261.1 + 99883 0.66 0.555141
Target:  5'- gCUCGGCgcgagGGCGUUga-CCGCCacccgGCCCg -3'
miRNA:   3'- aGAGCCG-----CCGCGAgaaGGCGGg----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 81428 0.66 0.555141
Target:  5'- ---aGGCGGCGUcgUCggCCGCcCCGCg- -3'
miRNA:   3'- agagCCGCCGCG--AGaaGGCG-GGCGgg -5'
23601 3' -63.3 NC_005261.1 + 10261 0.66 0.555141
Target:  5'- ---gGGCcuGGCGC-CUUCUGCCCugaggacuggcGCCCc -3'
miRNA:   3'- agagCCG--CCGCGaGAAGGCGGG-----------CGGG- -5'
23601 3' -63.3 NC_005261.1 + 547 0.66 0.555141
Target:  5'- --gCGGaCGGCgGCUCggCCGCCgCGCg- -3'
miRNA:   3'- agaGCC-GCCG-CGAGaaGGCGG-GCGgg -5'
23601 3' -63.3 NC_005261.1 + 18080 0.66 0.555141
Target:  5'- gCUCuGCGGCGCUCacgUUGCCCcacUCCa -3'
miRNA:   3'- aGAGcCGCCGCGAGaa-GGCGGGc--GGG- -5'
23601 3' -63.3 NC_005261.1 + 103438 0.66 0.555141
Target:  5'- --gCGcGCGcGCGcCUCgcggucggCCGCCgCGCCCg -3'
miRNA:   3'- agaGC-CGC-CGC-GAGaa------GGCGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 138218 0.66 0.555141
Target:  5'- --gCGGaCGGCgGCUCggCCGCCgCGCg- -3'
miRNA:   3'- agaGCC-GCCG-CGAGaaGGCGG-GCGgg -5'
23601 3' -63.3 NC_005261.1 + 17328 0.66 0.555141
Target:  5'- --cCGGCccGGCccaGCUC--CCGcCCCGCCCg -3'
miRNA:   3'- agaGCCG--CCG---CGAGaaGGC-GGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 110368 0.66 0.555141
Target:  5'- aCUCGGgcgaccgccgcaUGGCGCUgcggcuggaccgCUUCuaCGCCUGCCUg -3'
miRNA:   3'- aGAGCC------------GCCGCGA------------GAAG--GCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 36012 0.66 0.555141
Target:  5'- -aUCGccGCGGCcaagGCUCUUC--CCCGCCCc -3'
miRNA:   3'- agAGC--CGCCG----CGAGAAGgcGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 102631 0.66 0.555141
Target:  5'- cCUCGGCcGCgGCUUcgUCCG-CgGCCCg -3'
miRNA:   3'- aGAGCCGcCG-CGAGa-AGGCgGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 100806 0.66 0.555141
Target:  5'- gUCcCGGaagGGCGCgugCgcCUGCgCCGCCCa -3'
miRNA:   3'- -AGaGCCg--CCGCGa--GaaGGCG-GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 35127 0.66 0.555141
Target:  5'- --cCGGCGGCG-UCgcaC-CCCGCCCc -3'
miRNA:   3'- agaGCCGCCGCgAGaagGcGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 33852 0.66 0.546567
Target:  5'- gCUgGGCGG-GC-CgggagggccccccgCCGCCCGCCUc -3'
miRNA:   3'- aGAgCCGCCgCGaGaa------------GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 127698 0.66 0.545618
Target:  5'- --cCGGCGGCGCcggaggagCUgcgcgUgGCCUGCCUg -3'
miRNA:   3'- agaGCCGCCGCGa-------GAa----GgCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 78849 0.66 0.545618
Target:  5'- --cCGGCGGCGC-CcgCCGCCggaGCgCg -3'
miRNA:   3'- agaGCCGCCGCGaGaaGGCGGg--CGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.