Results 61 - 80 of 277 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23601 | 3' | -63.3 | NC_005261.1 | + | 60265 | 0.66 | 0.545618 |
Target: 5'- --gCGGCcgugaagaGGCGCcCggggUCCGCCCccgcgGCCCg -3' miRNA: 3'- agaGCCG--------CCGCGaGa---AGGCGGG-----CGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 62046 | 0.66 | 0.545618 |
Target: 5'- gCUCGGCcggcuccaGGCGCagCagCUGcCCCGCCUc -3' miRNA: 3'- aGAGCCG--------CCGCGa-GaaGGC-GGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 105022 | 0.66 | 0.545618 |
Target: 5'- cCagGGCGGUGUccUCUcCCGCucccacccCCGCCCc -3' miRNA: 3'- aGagCCGCCGCG--AGAaGGCG--------GGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 78849 | 0.66 | 0.545618 |
Target: 5'- --cCGGCGGCGC-CcgCCGCCggaGCgCg -3' miRNA: 3'- agaGCCGCCGCGaGaaGGCGGg--CGgG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 127698 | 0.66 | 0.545618 |
Target: 5'- --cCGGCGGCGCcggaggagCUgcgcgUgGCCUGCCUg -3' miRNA: 3'- agaGCCGCCGCGa-------GAa----GgCGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 60840 | 0.66 | 0.545618 |
Target: 5'- -aUCGGCGGCgGCgaggUCGCgCGCCg -3' miRNA: 3'- agAGCCGCCG-CGagaaGGCGgGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 61231 | 0.66 | 0.543719 |
Target: 5'- gCUCGGCguucGGCGCgagcucgacucgCUggCCGCCUccggggccguGCCCa -3' miRNA: 3'- aGAGCCG----CCGCGa-----------GAa-GGCGGG----------CGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 118517 | 0.67 | 0.536148 |
Target: 5'- gCUCGGCgaGGCGCcCUgccCCGCCgacCCCu -3' miRNA: 3'- aGAGCCG--CCGCGaGAa--GGCGGgc-GGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 46991 | 0.67 | 0.536148 |
Target: 5'- --cCGGCaGCGCgcg-CCGCgCCGCCg -3' miRNA: 3'- agaGCCGcCGCGagaaGGCG-GGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 106734 | 0.67 | 0.536148 |
Target: 5'- cCUCGuGCagccccGGCGC-CUcCgCGCCCGCCa -3' miRNA: 3'- aGAGC-CG------CCGCGaGAaG-GCGGGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 121390 | 0.67 | 0.536148 |
Target: 5'- --gCGGCGGCGg-----CGCCUGCCCg -3' miRNA: 3'- agaGCCGCCGCgagaagGCGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 123714 | 0.67 | 0.536148 |
Target: 5'- aCUCGGCcaucagcaGCGUcgUCgcggUCCGCaCCGCCa -3' miRNA: 3'- aGAGCCGc-------CGCG--AGa---AGGCG-GGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 73451 | 0.67 | 0.536148 |
Target: 5'- --cCGGCcGCGUcCgcgUCCGCgCGCCCc -3' miRNA: 3'- agaGCCGcCGCGaGa--AGGCGgGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 76498 | 0.67 | 0.536148 |
Target: 5'- cCUCGGCGcucGCGCgcgCgagcaUGCCCGUCUa -3' miRNA: 3'- aGAGCCGC---CGCGa--Gaag--GCGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 59564 | 0.67 | 0.530493 |
Target: 5'- -aUCGGCGcGCGCgcgCgccgcagcgggugCCGCgCCGCCa -3' miRNA: 3'- agAGCCGC-CGCGa--Gaa-----------GGCG-GGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 42897 | 0.67 | 0.526735 |
Target: 5'- gCUCGGCacgugacccGGCGCUCcggggCCGCCgGgCg -3' miRNA: 3'- aGAGCCG---------CCGCGAGaa---GGCGGgCgGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 53538 | 0.67 | 0.526735 |
Target: 5'- --cCGuGuuGCGCUCUUCgGCCgCGCCg -3' miRNA: 3'- agaGC-CgcCGCGAGAAGgCGG-GCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 129220 | 0.67 | 0.526735 |
Target: 5'- gCUgGuGCGGCGCcucaaguggCUcCCGCCCaGCCUc -3' miRNA: 3'- aGAgC-CGCCGCGa--------GAaGGCGGG-CGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 131771 | 0.67 | 0.526735 |
Target: 5'- --gCGGCgGGCGCgccgCUgggccccgaCGCCgCGCCCg -3' miRNA: 3'- agaGCCG-CCGCGa---GAag-------GCGG-GCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 24039 | 0.67 | 0.526735 |
Target: 5'- gUUCGGgugGGCGUcCUUgggugggCGCCCGCCCg -3' miRNA: 3'- aGAGCCg--CCGCGaGAAg------GCGGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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