miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 326 0.69 0.419772
Target:  5'- gCUgCGGCGGCgGCUgCggCgGCCCgcaGCCCg -3'
miRNA:   3'- aGA-GCCGCCG-CGA-GaaGgCGGG---CGGG- -5'
23601 3' -63.3 NC_005261.1 + 547 0.66 0.555141
Target:  5'- --gCGGaCGGCgGCUCggCCGCCgCGCg- -3'
miRNA:   3'- agaGCC-GCCG-CGAGaaGGCGG-GCGgg -5'
23601 3' -63.3 NC_005261.1 + 1307 0.69 0.403239
Target:  5'- gUCgccggCGGCGGCacgcGCUCcgggacgCCGCCgCGCCg -3'
miRNA:   3'- -AGa----GCCGCCG----CGAGaa-----GGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 1412 0.68 0.471723
Target:  5'- --gCGGCGGCgGCgggggCgg-CGCCCGCCUc -3'
miRNA:   3'- agaGCCGCCG-CGa----GaagGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 1594 0.8 0.083747
Target:  5'- -gUUGGCGGCGCgguggCUggCCGCCuCGCCCu -3'
miRNA:   3'- agAGCCGCCGCGa----GAa-GGCGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 1839 0.68 0.454033
Target:  5'- cCUCGGCGcGCGCgaaggCGCCgGgCCCg -3'
miRNA:   3'- aGAGCCGC-CGCGagaagGCGGgC-GGG- -5'
23601 3' -63.3 NC_005261.1 + 2686 0.68 0.454033
Target:  5'- --cCGGCGGCGCgccggCUUuuGgCCgGCgCCg -3'
miRNA:   3'- agaGCCGCCGCGa----GAAggC-GGgCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 2760 0.66 0.545618
Target:  5'- gUCgCGGCgGGC-CUCgag-GCCCGCCCc -3'
miRNA:   3'- -AGaGCCG-CCGcGAGaaggCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 3168 0.66 0.59366
Target:  5'- --gCGGCGGCGgcCUCUUCC--UCGUCCu -3'
miRNA:   3'- agaGCCGCCGC--GAGAAGGcgGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 3445 0.66 0.574326
Target:  5'- ---aGGCgGGCGCgCgggCCGCCgCGCCg -3'
miRNA:   3'- agagCCG-CCGCGaGaa-GGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 3744 0.72 0.268043
Target:  5'- --cCGGCGGCGCa---CCGCgCCGCCUc -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCG-GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 3892 0.74 0.193719
Target:  5'- gCUCGGCGaGCGCggcgCgggCGCCCGCgCCg -3'
miRNA:   3'- aGAGCCGC-CGCGa---GaagGCGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 4407 0.68 0.454033
Target:  5'- --gCGGCGGCGCg---CUGCCgGgCCa -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCGGgCgGG- -5'
23601 3' -63.3 NC_005261.1 + 4908 0.75 0.180343
Target:  5'- cUUCGGCGGCgGCUgCcUCCGCCgcggccgcgagCGCCCg -3'
miRNA:   3'- aGAGCCGCCG-CGA-GaAGGCGG-----------GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 5120 0.72 0.272306
Target:  5'- gCUCGGCgcgggcggcccgccGGCGCUCgcgCGCCUcgGCCCg -3'
miRNA:   3'- aGAGCCG--------------CCGCGAGaagGCGGG--CGGG- -5'
23601 3' -63.3 NC_005261.1 + 5579 0.66 0.603368
Target:  5'- --aUGGgGGCGC-CgagggCGCCCGCCUc -3'
miRNA:   3'- agaGCCgCCGCGaGaag--GCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 5893 0.68 0.43671
Target:  5'- gCUCGGCuGGCuaGCUCggCCGgCCGgCUg -3'
miRNA:   3'- aGAGCCG-CCG--CGAGaaGGCgGGCgGG- -5'
23601 3' -63.3 NC_005261.1 + 6140 0.69 0.426499
Target:  5'- -gUCGGCGGCgacgguGCUCgccuuauuauagUCCcuuugaagGCCCGCCUa -3'
miRNA:   3'- agAGCCGCCG------CGAGa-----------AGG--------CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 6367 0.66 0.563753
Target:  5'- gUC-CGGCGcCGCUCccccuuucccccgUUCCGCCC-CCUu -3'
miRNA:   3'- -AGaGCCGCcGCGAG-------------AAGGCGGGcGGG- -5'
23601 3' -63.3 NC_005261.1 + 8792 0.72 0.276624
Target:  5'- cCUCGGCGGCuGCag--CCGCCgagggcuugaaggggCGCCCg -3'
miRNA:   3'- aGAGCCGCCG-CGagaaGGCGG---------------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.