miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 9721 0.66 0.602396
Target:  5'- --gCaGCaGCGCUCcgCCgcgacuaGCCCGCCCg -3'
miRNA:   3'- agaGcCGcCGCGAGaaGG-------CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 10036 0.72 0.286698
Target:  5'- -gUCGGgGGCGCUCgcucaCCgGCCCGaCCUc -3'
miRNA:   3'- agAGCCgCCGCGAGaa---GG-CGGGC-GGG- -5'
23601 3' -63.3 NC_005261.1 + 10178 0.66 0.583977
Target:  5'- gCUCcuGCcGC-CUCUgCCGCUCGCCCg -3'
miRNA:   3'- aGAGc-CGcCGcGAGAaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 10261 0.66 0.555141
Target:  5'- ---gGGCcuGGCGC-CUUCUGCCCugaggacuggcGCCCc -3'
miRNA:   3'- agagCCG--CCGCGaGAAGGCGGG-----------CGGG- -5'
23601 3' -63.3 NC_005261.1 + 10692 0.68 0.454033
Target:  5'- cUCcCGGCaaaGGCGUUCgcgggCCGCCUccggGCCCc -3'
miRNA:   3'- -AGaGCCG---CCGCGAGaa---GGCGGG----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 10855 0.7 0.36376
Target:  5'- aUCUCGGaCGGCgaggacgacguGUUCUUCC-CCgaGCCCg -3'
miRNA:   3'- -AGAGCC-GCCG-----------CGAGAAGGcGGg-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 10907 0.69 0.411454
Target:  5'- --gCGGCGGCaGCgccgCCGCCgGCCg -3'
miRNA:   3'- agaGCCGCCG-CGagaaGGCGGgCGGg -5'
23601 3' -63.3 NC_005261.1 + 11044 0.68 0.43671
Target:  5'- --cCGGCGGCaCUCgggcgCCGCCCagGCgCCg -3'
miRNA:   3'- agaGCCGCCGcGAGaa---GGCGGG--CG-GG- -5'
23601 3' -63.3 NC_005261.1 + 11263 0.77 0.134719
Target:  5'- gUCUCGGU--CGCUCUgUCCGUCCGUCCg -3'
miRNA:   3'- -AGAGCCGccGCGAGA-AGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 11932 0.69 0.419772
Target:  5'- gCUgCGGCGGCccGCgccgCggCgGCUCGCCCg -3'
miRNA:   3'- aGA-GCCGCCG--CGa---GaaGgCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 12336 0.67 0.498892
Target:  5'- gCUUGGcCGGCGCgg--CCGC-CGCCg -3'
miRNA:   3'- aGAGCC-GCCGCGagaaGGCGgGCGGg -5'
23601 3' -63.3 NC_005261.1 + 12719 0.68 0.454033
Target:  5'- gCUCGG-GcGCGCgggcCCGCCgGCCCc -3'
miRNA:   3'- aGAGCCgC-CGCGagaaGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 12938 0.66 0.59366
Target:  5'- -gUCGuaGGUGCgCUUCUgGCCCGCgCg -3'
miRNA:   3'- agAGCcgCCGCGaGAAGG-CGGGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 13066 0.66 0.59366
Target:  5'- --cCuGCcgGGCGCg--UCCGCCgGCCCg -3'
miRNA:   3'- agaGcCG--CCGCGagaAGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 13734 0.66 0.603368
Target:  5'- ---gGGUGG-GCUUggCCGCCCcucGCCCc -3'
miRNA:   3'- agagCCGCCgCGAGaaGGCGGG---CGGG- -5'
23601 3' -63.3 NC_005261.1 + 14534 0.7 0.36376
Target:  5'- --gCGGUGGCGCgg--CCGCCCGgcgaCCa -3'
miRNA:   3'- agaGCCGCCGCGagaaGGCGGGCg---GG- -5'
23601 3' -63.3 NC_005261.1 + 15365 0.75 0.159864
Target:  5'- gUCcCGGCGGCGCUCggcgcccUCgGCgCCGCCg -3'
miRNA:   3'- -AGaGCCGCCGCGAGa------AGgCG-GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 15471 0.67 0.526735
Target:  5'- uUCUCGaccGCGGCGgaCacgcgCCGCUCGCUg -3'
miRNA:   3'- -AGAGC---CGCCGCgaGaa---GGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 16235 0.69 0.428191
Target:  5'- cCUCGG-GGCGgUCga-CGUCCGCgCCg -3'
miRNA:   3'- aGAGCCgCCGCgAGaagGCGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 16733 0.69 0.419772
Target:  5'- cCUCGGCGagccGCGCgggcgCCGCCaugaccaGCCCc -3'
miRNA:   3'- aGAGCCGC----CGCGagaa-GGCGGg------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.