miRNA display CGI


Results 61 - 80 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 29312 0.69 0.387124
Target:  5'- --cCGGCaGCGCgccgCcgCCGCCCGgCCg -3'
miRNA:   3'- agaGCCGcCGCGa---GaaGGCGGGCgGG- -5'
23601 3' -63.3 NC_005261.1 + 29810 0.73 0.244709
Target:  5'- --cCGGCGGCGCggg--CGCCCGCgCCg -3'
miRNA:   3'- agaGCCGCCGCGagaagGCGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 29869 0.69 0.419772
Target:  5'- --gCGGCgccGGCGCcgCUgCCGCCagCGCCCg -3'
miRNA:   3'- agaGCCG---CCGCGa-GAaGGCGG--GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 29966 0.69 0.411454
Target:  5'- gCUagaGGCGGCGCggugcgCCGCCgGCgCg -3'
miRNA:   3'- aGAg--CCGCCGCGagaa--GGCGGgCGgG- -5'
23601 3' -63.3 NC_005261.1 + 30158 0.68 0.445324
Target:  5'- cCUUaGCGGCGC-Cg--CGCCCGCCg -3'
miRNA:   3'- aGAGcCGCCGCGaGaagGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 30256 0.73 0.239146
Target:  5'- aCUCGacgcGCGGCGCggCggcCCGCgCGCCCg -3'
miRNA:   3'- aGAGC----CGCCGCGa-Gaa-GGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 30297 0.72 0.27415
Target:  5'- --cUGGCccgcGCGCUCUUCaGCCCGCCg -3'
miRNA:   3'- agaGCCGc---CGCGAGAAGgCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 30945 0.68 0.445324
Target:  5'- cCUCGGgGGCGggcCUCgag-GCCCGCCg -3'
miRNA:   3'- aGAGCCgCCGC---GAGaaggCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 31060 0.71 0.29314
Target:  5'- --gCGGCGGgaGCcgCcgCUGCCCGCCCg -3'
miRNA:   3'- agaGCCGCCg-CGa-GaaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 31107 0.7 0.333442
Target:  5'- --cCGGCGGCcccgccgccgacgGCggCUUCCGCcgcgugCCGCCCg -3'
miRNA:   3'- agaGCCGCCG-------------CGa-GAAGGCG------GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 31222 0.67 0.526735
Target:  5'- gCUC-GCGGaccaccCGCUCUUCCccgaGCCCuggcGCCCg -3'
miRNA:   3'- aGAGcCGCC------GCGAGAAGG----CGGG----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 31403 0.68 0.454033
Target:  5'- --gUGGUGGUGCUCUacgacCCGC-UGCCCg -3'
miRNA:   3'- agaGCCGCCGCGAGAa----GGCGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 31867 0.69 0.428191
Target:  5'- cUUCGGgccCGGCGC-CUUCgCGCgCGCCg -3'
miRNA:   3'- aGAGCC---GCCGCGaGAAG-GCGgGCGGg -5'
23601 3' -63.3 NC_005261.1 + 32230 0.66 0.59366
Target:  5'- --gCGGCGGUgGC-CUUCUGCgCGgCCg -3'
miRNA:   3'- agaGCCGCCG-CGaGAAGGCGgGCgGG- -5'
23601 3' -63.3 NC_005261.1 + 32508 0.66 0.59366
Target:  5'- -aUCGGCGGgGgg--UCCGCgCCGCgCCc -3'
miRNA:   3'- agAGCCGCCgCgagaAGGCG-GGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 33061 0.66 0.574326
Target:  5'- aCUCGGCgccggggacgcGGCGCUggCggCCGC-CGCCa -3'
miRNA:   3'- aGAGCCG-----------CCGCGA--GaaGGCGgGCGGg -5'
23601 3' -63.3 NC_005261.1 + 33167 0.73 0.238595
Target:  5'- --gCGGCGGCcgagccgccguccGCcCUgccccCCGCCCGCCCg -3'
miRNA:   3'- agaGCCGCCG-------------CGaGAa----GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 33516 0.66 0.583977
Target:  5'- --gCGGCGGCGgca--CCGCUgGCCCc -3'
miRNA:   3'- agaGCCGCCGCgagaaGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 33628 0.67 0.517386
Target:  5'- --cCGGgGGCGCgcc-CCGCaccCCGCCCc -3'
miRNA:   3'- agaGCCgCCGCGagaaGGCG---GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 33742 0.73 0.217943
Target:  5'- cCUCGcGCGGCGC-CggggCCggGCCCGCUCg -3'
miRNA:   3'- aGAGC-CGCCGCGaGaa--GG--CGGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.