miRNA display CGI


Results 81 - 100 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 33852 0.66 0.546567
Target:  5'- gCUgGGCGG-GC-CgggagggccccccgCCGCCCGCCUc -3'
miRNA:   3'- aGAgCCGCCgCGaGaa------------GGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 34020 0.67 0.523924
Target:  5'- cCUCGacgugaucaccggcGCGGCGCgCgcgCUGCCCuGCCUg -3'
miRNA:   3'- aGAGC--------------CGCCGCGaGaa-GGCGGG-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 34415 0.67 0.508103
Target:  5'- ---gGGUGGCGCgCggCCcgcGCCUGCCCc -3'
miRNA:   3'- agagCCGCCGCGaGaaGG---CGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 35027 0.68 0.480699
Target:  5'- gUCUCGGUcgcuGGCGCg---CCGCCCuaacggcgGCCg -3'
miRNA:   3'- -AGAGCCG----CCGCGagaaGGCGGG--------CGGg -5'
23601 3' -63.3 NC_005261.1 + 35064 0.72 0.27415
Target:  5'- --gCGGCGGCGgUC-UCCGCgcccccUCGCCCu -3'
miRNA:   3'- agaGCCGCCGCgAGaAGGCG------GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 35127 0.66 0.555141
Target:  5'- --cCGGCGGCG-UCgcaC-CCCGCCCc -3'
miRNA:   3'- agaGCCGCCGCgAGaagGcGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 35425 0.67 0.498892
Target:  5'- aUCUgaCGGCagaaGCGC----CCGCCCGCCCc -3'
miRNA:   3'- -AGA--GCCGc---CGCGagaaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 36012 0.66 0.555141
Target:  5'- -aUCGccGCGGCcaagGCUCUUC--CCCGCCCc -3'
miRNA:   3'- agAGC--CGCCG----CGAGAAGgcGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 36698 0.72 0.286698
Target:  5'- cCUCGGCcccccGCGCUga-CCGCCgGCCCu -3'
miRNA:   3'- aGAGCCGc----CGCGAgaaGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 36847 0.71 0.320034
Target:  5'- --cCGGgGGCuaGCcCgcgcUCCGCCCGCCCc -3'
miRNA:   3'- agaGCCgCCG--CGaGa---AGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 37360 0.68 0.43671
Target:  5'- ---gGGCGGUGCUCg-CCGCCCGa-- -3'
miRNA:   3'- agagCCGCCGCGAGaaGGCGGGCggg -5'
23601 3' -63.3 NC_005261.1 + 37692 0.68 0.448797
Target:  5'- cUUCGGCcccGGCGC-CUucgucccccaagcccUCgGCCCGCCg -3'
miRNA:   3'- aGAGCCG---CCGCGaGA---------------AGgCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 39797 0.7 0.334159
Target:  5'- ---gGGCGGCGCgg--CCGCCgGCgCCa -3'
miRNA:   3'- agagCCGCCGCGagaaGGCGGgCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 40850 0.66 0.59366
Target:  5'- cCUCGaagGGCGCg--UCCGCgaaggCCGCCCc -3'
miRNA:   3'- aGAGCcg-CCGCGagaAGGCG-----GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 41067 0.77 0.134719
Target:  5'- --cCGGCGGCGCgg-UCCGCCgccaGCCCc -3'
miRNA:   3'- agaGCCGCCGCGagaAGGCGGg---CGGG- -5'
23601 3' -63.3 NC_005261.1 + 42897 0.67 0.526735
Target:  5'- gCUCGGCacgugacccGGCGCUCcggggCCGCCgGgCg -3'
miRNA:   3'- aGAGCCG---------CCGCGAGaa---GGCGGgCgGg -5'
23601 3' -63.3 NC_005261.1 + 45413 0.69 0.403239
Target:  5'- cCUgCuGCGGCGC-CUgcgcccgCCGCCCGCgCg -3'
miRNA:   3'- aGA-GcCGCCGCGaGAa------GGCGGGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 45616 0.66 0.603368
Target:  5'- --cCGGCGGCGCggcgCggCgcggcggGCCCGCgCCg -3'
miRNA:   3'- agaGCCGCCGCGa---GaaGg------CGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 45898 0.66 0.583977
Target:  5'- aCUCuGuUGGCGCUCgccgUCGuCCuCGCCCu -3'
miRNA:   3'- aGAGcC-GCCGCGAGaa--GGC-GG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 46991 0.67 0.536148
Target:  5'- --cCGGCaGCGCgcg-CCGCgCCGCCg -3'
miRNA:   3'- agaGCCGcCGCGagaaGGCG-GGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.