miRNA display CGI


Results 61 - 80 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 106305 0.71 0.291195
Target:  5'- cCUCGGCGaGCaGgUCUUCCGucgugagccacggcCCCGCCg -3'
miRNA:   3'- aGAGCCGC-CG-CgAGAAGGC--------------GGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 106225 0.69 0.403239
Target:  5'- --gCGGCcgccuGGCGCgg--CCGCCgCGCCCu -3'
miRNA:   3'- agaGCCG-----CCGCGagaaGGCGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 105966 0.7 0.356192
Target:  5'- cCUCGGCGcccaGCGCggcgUCgacgCCGCCCGCg- -3'
miRNA:   3'- aGAGCCGC----CGCG----AGaa--GGCGGGCGgg -5'
23601 3' -63.3 NC_005261.1 + 105481 0.69 0.419772
Target:  5'- cCUCGG-GGCGCgCgggCCccgaGCCCGCCg -3'
miRNA:   3'- aGAGCCgCCGCGaGaa-GG----CGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 105022 0.66 0.545618
Target:  5'- cCagGGCGGUGUccUCUcCCGCucccacccCCGCCCc -3'
miRNA:   3'- aGagCCGCCGCG--AGAaGGCG--------GGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 104530 0.7 0.346521
Target:  5'- --aCGGCGGCcgccaccaggcgcaGCUUggcgUCCGCCagguCGCCCa -3'
miRNA:   3'- agaGCCGCCG--------------CGAGa---AGGCGG----GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 104461 0.71 0.29314
Target:  5'- --cCGGCGGCGC-CgUCCaCCuCGCCCu -3'
miRNA:   3'- agaGCCGCCGCGaGaAGGcGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 104275 0.7 0.341391
Target:  5'- gUCUCGGCGGCuGCgCgggCCucgcagGCCCGCgCg -3'
miRNA:   3'- -AGAGCCGCCG-CGaGaa-GG------CGGGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 104098 0.7 0.371438
Target:  5'- --gCGGCGGCGCUCcgcgcgaCCGCagCCGCgCg -3'
miRNA:   3'- agaGCCGCCGCGAGaa-----GGCG--GGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 103799 0.71 0.306361
Target:  5'- cUUCGGUGuGCGCcgUUgCGCCCGCCg -3'
miRNA:   3'- aGAGCCGC-CGCGagAAgGCGGGCGGg -5'
23601 3' -63.3 NC_005261.1 + 103736 0.78 0.110469
Target:  5'- uUCUuggCGGCGGCGC-CcUCCGCCUGCgCCu -3'
miRNA:   3'- -AGA---GCCGCCGCGaGaAGGCGGGCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 103517 0.68 0.445324
Target:  5'- --aCGGCGGCGUccgcggcaUCcgCCGCCUccucgGCCCc -3'
miRNA:   3'- agaGCCGCCGCG--------AGaaGGCGGG-----CGGG- -5'
23601 3' -63.3 NC_005261.1 + 103438 0.66 0.555141
Target:  5'- --gCGcGCGcGCGcCUCgcggucggCCGCCgCGCCCg -3'
miRNA:   3'- agaGC-CGC-CGC-GAGaa------GGCGG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 103374 0.72 0.27415
Target:  5'- gCUCGGCcGCGCg---CCGCCgCGCCg -3'
miRNA:   3'- aGAGCCGcCGCGagaaGGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 102956 0.67 0.514594
Target:  5'- --gCGGCGGCcgcgggcgccgcggGCUCcgCCGCCgCGCgCg -3'
miRNA:   3'- agaGCCGCCG--------------CGAGaaGGCGG-GCGgG- -5'
23601 3' -63.3 NC_005261.1 + 102787 0.67 0.505332
Target:  5'- cCUCGccccggccgcgagcGCGGCGCcCagCCGCCgCGCgCCg -3'
miRNA:   3'- aGAGC--------------CGCCGCGaGaaGGCGG-GCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 102667 0.68 0.462834
Target:  5'- cCUCcGCGGCGCccagCgccgcgUCCGCCgCGgCCg -3'
miRNA:   3'- aGAGcCGCCGCGa---Ga-----AGGCGG-GCgGG- -5'
23601 3' -63.3 NC_005261.1 + 102631 0.66 0.555141
Target:  5'- cCUCGGCcGCgGCUUcgUCCG-CgGCCCg -3'
miRNA:   3'- aGAGCCGcCG-CGAGa-AGGCgGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 102587 0.69 0.427345
Target:  5'- -gUCGGCGGCcucgcccgcGC-CUUCCGCguccucgCCGCCa -3'
miRNA:   3'- agAGCCGCCG---------CGaGAAGGCG-------GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 102460 0.66 0.564712
Target:  5'- nCUCGGCgcgcaGGCGCcggaccuccUCggcgcgCCGCCgCGCCa -3'
miRNA:   3'- aGAGCCG-----CCGCG---------AGaa----GGCGG-GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.