miRNA display CGI


Results 61 - 80 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 3' -63.3 NC_005261.1 + 132584 0.66 0.583977
Target:  5'- -gUCGGC-GCGCccgCggaCGCCCgGCCCg -3'
miRNA:   3'- agAGCCGcCGCGa--GaagGCGGG-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 110822 0.66 0.583977
Target:  5'- --gCGGaCGGgGCcgcggacgaguuUCcgCUGCCCGCCCu -3'
miRNA:   3'- agaGCC-GCCgCG------------AGaaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 74888 0.66 0.574326
Target:  5'- --gCGGCGGCGgagUCggCgGCCCGCgCu -3'
miRNA:   3'- agaGCCGCCGCg--AGaaGgCGGGCGgG- -5'
23601 3' -63.3 NC_005261.1 + 33061 0.66 0.574326
Target:  5'- aCUCGGCgccggggacgcGGCGCUggCggCCGC-CGCCa -3'
miRNA:   3'- aGAGCCG-----------CCGCGA--GaaGGCGgGCGGg -5'
23601 3' -63.3 NC_005261.1 + 3445 0.66 0.574326
Target:  5'- ---aGGCgGGCGCgCgggCCGCCgCGCCg -3'
miRNA:   3'- agagCCG-CCGCGaGaa-GGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 27450 0.66 0.571437
Target:  5'- gUUUGGCGGCGgg---CCGCCCcgcggggcgggcagGCCCu -3'
miRNA:   3'- aGAGCCGCCGCgagaaGGCGGG--------------CGGG- -5'
23601 3' -63.3 NC_005261.1 + 77300 0.66 0.565672
Target:  5'- gUCgCGaGCGGaCGCgcacgccagccggagCUUCCGCCgGCgCCg -3'
miRNA:   3'- -AGaGC-CGCC-GCGa--------------GAAGGCGGgCG-GG- -5'
23601 3' -63.3 NC_005261.1 + 102460 0.66 0.564712
Target:  5'- nCUCGGCgcgcaGGCGCcggaccuccUCggcgcgCCGCCgCGCCa -3'
miRNA:   3'- aGAGCCG-----CCGCG---------AGaa----GGCGG-GCGGg -5'
23601 3' -63.3 NC_005261.1 + 54234 0.66 0.564712
Target:  5'- gUCacgCGGCGcGCGCUCaugUgCaGCgCGCCCu -3'
miRNA:   3'- -AGa--GCCGC-CGCGAGa--AgG-CGgGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 121634 0.66 0.564712
Target:  5'- gCUCGGCGGC-Cg---CCGCCgGCg- -3'
miRNA:   3'- aGAGCCGCCGcGagaaGGCGGgCGgg -5'
23601 3' -63.3 NC_005261.1 + 133143 0.66 0.574326
Target:  5'- cCUgCGGUGcGCGCUCgccgCCGUcggcgucgCCGCCg -3'
miRNA:   3'- aGA-GCCGC-CGCGAGaa--GGCG--------GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 97456 0.66 0.57529
Target:  5'- cUUCGGCGGCGC-CgggaUCGCCaaaaccgucggggggGCCCu -3'
miRNA:   3'- aGAGCCGCCGCGaGaa--GGCGGg--------------CGGG- -5'
23601 3' -63.3 NC_005261.1 + 45898 0.66 0.583977
Target:  5'- aCUCuGuUGGCGCUCgccgUCGuCCuCGCCCu -3'
miRNA:   3'- aGAGcC-GCCGCGAGaa--GGC-GG-GCGGG- -5'
23601 3' -63.3 NC_005261.1 + 33516 0.66 0.583977
Target:  5'- --gCGGCGGCGgca--CCGCUgGCCCc -3'
miRNA:   3'- agaGCCGCCGCgagaaGGCGGgCGGG- -5'
23601 3' -63.3 NC_005261.1 + 95197 0.66 0.583977
Target:  5'- cCUgGGaccCGCg---CCGCCCGCCCg -3'
miRNA:   3'- aGAgCCgccGCGagaaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 57980 0.66 0.583977
Target:  5'- ---aGGCGcGCGCgg--CCGCgCCGCCa -3'
miRNA:   3'- agagCCGC-CGCGagaaGGCG-GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 28784 0.66 0.583977
Target:  5'- --gCGGCgcgGGCGCUCgcggCCGCggcggaggcagCCGCCg -3'
miRNA:   3'- agaGCCG---CCGCGAGaa--GGCG-----------GGCGGg -5'
23601 3' -63.3 NC_005261.1 + 20139 0.66 0.583977
Target:  5'- gCUCcGCGaGCGCUCaggCCGCgCCgGCUCu -3'
miRNA:   3'- aGAGcCGC-CGCGAGaa-GGCG-GG-CGGG- -5'
23601 3' -63.3 NC_005261.1 + 10178 0.66 0.583977
Target:  5'- gCUCcuGCcGC-CUCUgCCGCUCGCCCg -3'
miRNA:   3'- aGAGc-CGcCGcGAGAaGGCGGGCGGG- -5'
23601 3' -63.3 NC_005261.1 + 51162 0.66 0.578182
Target:  5'- cCUgCGGCGGCGCaucauaugaacgcgCUggcgacgCuCGCCaCGCCCc -3'
miRNA:   3'- aGA-GCCGCCGCGa-------------GAa------G-GCGG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.