Results 81 - 100 of 277 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23601 | 3' | -63.3 | NC_005261.1 | + | 6367 | 0.66 | 0.563753 |
Target: 5'- gUC-CGGCGcCGCUCccccuuucccccgUUCCGCCC-CCUu -3' miRNA: 3'- -AGaGCCGCcGCGAG-------------AAGGCGGGcGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 100847 | 0.66 | 0.560878 |
Target: 5'- gCUCGGCGaccuGCGCgUCgaaggCCGCCagaagcgcgcgcaGCCCc -3' miRNA: 3'- aGAGCCGC----CGCG-AGaa---GGCGGg------------CGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 110368 | 0.66 | 0.555141 |
Target: 5'- aCUCGGgcgaccgccgcaUGGCGCUgcggcuggaccgCUUCuaCGCCUGCCUg -3' miRNA: 3'- aGAGCC------------GCCGCGA------------GAAG--GCGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 36012 | 0.66 | 0.555141 |
Target: 5'- -aUCGccGCGGCcaagGCUCUUC--CCCGCCCc -3' miRNA: 3'- agAGC--CGCCG----CGAGAAGgcGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 102631 | 0.66 | 0.555141 |
Target: 5'- cCUCGGCcGCgGCUUcgUCCG-CgGCCCg -3' miRNA: 3'- aGAGCCGcCG-CGAGa-AGGCgGgCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 100806 | 0.66 | 0.555141 |
Target: 5'- gUCcCGGaagGGCGCgugCgcCUGCgCCGCCCa -3' miRNA: 3'- -AGaGCCg--CCGCGa--GaaGGCG-GGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 35127 | 0.66 | 0.555141 |
Target: 5'- --cCGGCGGCG-UCgcaC-CCCGCCCc -3' miRNA: 3'- agaGCCGCCGCgAGaagGcGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 121634 | 0.66 | 0.564712 |
Target: 5'- gCUCGGCGGC-Cg---CCGCCgGCg- -3' miRNA: 3'- aGAGCCGCCGcGagaaGGCGGgCGgg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 54234 | 0.66 | 0.564712 |
Target: 5'- gUCacgCGGCGcGCGCUCaugUgCaGCgCGCCCu -3' miRNA: 3'- -AGa--GCCGC-CGCGAGa--AgG-CGgGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 102460 | 0.66 | 0.564712 |
Target: 5'- nCUCGGCgcgcaGGCGCcggaccuccUCggcgcgCCGCCgCGCCa -3' miRNA: 3'- aGAGCCG-----CCGCG---------AGaa----GGCGG-GCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 20139 | 0.66 | 0.583977 |
Target: 5'- gCUCcGCGaGCGCUCaggCCGCgCCgGCUCu -3' miRNA: 3'- aGAGcCGC-CGCGAGaa-GGCG-GG-CGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 10178 | 0.66 | 0.583977 |
Target: 5'- gCUCcuGCcGC-CUCUgCCGCUCGCCCg -3' miRNA: 3'- aGAGc-CGcCGcGAGAaGGCGGGCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 51162 | 0.66 | 0.578182 |
Target: 5'- cCUgCGGCGGCGCaucauaugaacgcgCUggcgacgCuCGCCaCGCCCc -3' miRNA: 3'- aGA-GCCGCCGCGa-------------GAa------G-GCGG-GCGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 97456 | 0.66 | 0.57529 |
Target: 5'- cUUCGGCGGCGC-CgggaUCGCCaaaaccgucggggggGCCCu -3' miRNA: 3'- aGAGCCGCCGCGaGaa--GGCGGg--------------CGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 133143 | 0.66 | 0.574326 |
Target: 5'- cCUgCGGUGcGCGCUCgccgCCGUcggcgucgCCGCCg -3' miRNA: 3'- aGA-GCCGC-CGCGAGaa--GGCG--------GGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 74888 | 0.66 | 0.574326 |
Target: 5'- --gCGGCGGCGgagUCggCgGCCCGCgCu -3' miRNA: 3'- agaGCCGCCGCg--AGaaGgCGGGCGgG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 33061 | 0.66 | 0.574326 |
Target: 5'- aCUCGGCgccggggacgcGGCGCUggCggCCGC-CGCCa -3' miRNA: 3'- aGAGCCG-----------CCGCGA--GaaGGCGgGCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 3445 | 0.66 | 0.574326 |
Target: 5'- ---aGGCgGGCGCgCgggCCGCCgCGCCg -3' miRNA: 3'- agagCCG-CCGCGaGaa-GGCGG-GCGGg -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 27450 | 0.66 | 0.571437 |
Target: 5'- gUUUGGCGGCGgg---CCGCCCcgcggggcgggcagGCCCu -3' miRNA: 3'- aGAGCCGCCGCgagaaGGCGGG--------------CGGG- -5' |
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23601 | 3' | -63.3 | NC_005261.1 | + | 77300 | 0.66 | 0.565672 |
Target: 5'- gUCgCGaGCGGaCGCgcacgccagccggagCUUCCGCCgGCgCCg -3' miRNA: 3'- -AGaGC-CGCC-GCGa--------------GAAGGCGGgCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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