miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 5' -52.5 NC_005261.1 + 115999 0.66 0.980299
Target:  5'- aCGAGccgccCGAGgcGGCCUgagcCGCCGacGGCg -3'
miRNA:   3'- -GCUCac---GCUCuuCUGGAa---GCGGU--UCG- -5'
23601 5' -52.5 NC_005261.1 + 92793 0.66 0.980299
Target:  5'- gGGGU-CGGGGu--CCggUCGCCGGGCg -3'
miRNA:   3'- gCUCAcGCUCUucuGGa-AGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 46865 0.66 0.977995
Target:  5'- aGGGUGgGgaAGAAGGCCgagaagUCgaacuuggccaGCCAGGCc -3'
miRNA:   3'- gCUCACgC--UCUUCUGGa-----AG-----------CGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 49122 0.66 0.977995
Target:  5'- uCGAGcgcgGCGGGcGGGACCcccgCGCgCAGGUa -3'
miRNA:   3'- -GCUCa---CGCUC-UUCUGGaa--GCG-GUUCG- -5'
23601 5' -52.5 NC_005261.1 + 105385 0.66 0.977995
Target:  5'- gCGGGUGCGcGcuGACCacgCGCCGcucgacguagGGCu -3'
miRNA:   3'- -GCUCACGCuCuuCUGGaa-GCGGU----------UCG- -5'
23601 5' -52.5 NC_005261.1 + 137042 0.66 0.977995
Target:  5'- -cGGUG-GAGGgcGGACCgUCGgCAGGCg -3'
miRNA:   3'- gcUCACgCUCU--UCUGGaAGCgGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 44900 0.66 0.977995
Target:  5'- cCGGG-GCGuacacGGACCcaCGCCGGGCc -3'
miRNA:   3'- -GCUCaCGCucu--UCUGGaaGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 94732 0.66 0.977995
Target:  5'- cCGGG-GCGGGGAcACCgaCGCCGAcGUg -3'
miRNA:   3'- -GCUCaCGCUCUUcUGGaaGCGGUU-CG- -5'
23601 5' -52.5 NC_005261.1 + 131075 0.66 0.977267
Target:  5'- --cGUGCGGGAcuGCCUggccacguacgccgUCGCCGcGCc -3'
miRNA:   3'- gcuCACGCUCUucUGGA--------------AGCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 13302 0.66 0.975498
Target:  5'- gGuGUGCGAcGggGGCCU-CGUacgcAGCg -3'
miRNA:   3'- gCuCACGCU-CuuCUGGAaGCGgu--UCG- -5'
23601 5' -52.5 NC_005261.1 + 72550 0.66 0.975498
Target:  5'- aGGGgacggGCGAGGAaaaaacGCCgggCGCCGAGUc -3'
miRNA:   3'- gCUCa----CGCUCUUc-----UGGaa-GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 18121 0.66 0.975498
Target:  5'- aCGAGcgGgGGGAagcagccgcAGGCCcagUCGCCGauGGCg -3'
miRNA:   3'- -GCUCa-CgCUCU---------UCUGGa--AGCGGU--UCG- -5'
23601 5' -52.5 NC_005261.1 + 62427 0.66 0.975498
Target:  5'- cCGAGgccaGCGcGA--GCCggUCGCCGGGCc -3'
miRNA:   3'- -GCUCa---CGCuCUucUGGa-AGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 35288 0.66 0.9728
Target:  5'- uGAGggagGaCGAGAAGAg---CGCCGGGCc -3'
miRNA:   3'- gCUCa---C-GCUCUUCUggaaGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 131677 0.66 0.972519
Target:  5'- aGGGUGCGAccgcccugcgcgcGGcgcuGGACCgccucgagaGCCAGGCg -3'
miRNA:   3'- gCUCACGCU-------------CU----UCUGGaag------CGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 69881 0.66 0.969894
Target:  5'- cCGGGcGCGAGuguguGugUUUUGCCGggGGCg -3'
miRNA:   3'- -GCUCaCGCUCuu---CugGAAGCGGU--UCG- -5'
23601 5' -52.5 NC_005261.1 + 108631 0.66 0.969894
Target:  5'- cCGAGU-CGGcaaucuccgcGAAGGCCUcCGCCAgccccGGCg -3'
miRNA:   3'- -GCUCAcGCU----------CUUCUGGAaGCGGU-----UCG- -5'
23601 5' -52.5 NC_005261.1 + 93432 0.67 0.966772
Target:  5'- gCGAuGUGCuuGAGGGCCgUgGCCA-GCa -3'
miRNA:   3'- -GCU-CACGcuCUUCUGGaAgCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 23482 0.67 0.966772
Target:  5'- gCGAGUGCGc--GGGCC--CGCCuGGGCa -3'
miRNA:   3'- -GCUCACGCucuUCUGGaaGCGG-UUCG- -5'
23601 5' -52.5 NC_005261.1 + 9140 0.67 0.966772
Target:  5'- gCGGGUGC-AGGcaaaucgggcugGGACCUggCGCCGcccGGCc -3'
miRNA:   3'- -GCUCACGcUCU------------UCUGGAa-GCGGU---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.